Gene Sde_3034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_3034 
Symbol 
ID3967698 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3875326 
End bp3877113 
Gene Length1788 bp 
Protein Length595 aa 
Translation table11 
GC content50% 
IMG OID637922131 
ProductATP-dependent RNA helicase DeaD 
Protein accessionYP_528503 
Protein GI90022676 
COG category[L] Replication, recombination and repair
[J] Translation, ribosomal structure and biogenesis
[K] Transcription 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.7314e-06 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value1.37402e-06 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGACCGAAT CCAGCCCCAA TTTTGCTCAA CTGGGCCTAA ATGAACACAT TCTTAAAGCA 
CTAACAGACG TTGGTTACGA AACCCCCTCC CCCATTCAGG CCAAAAGTAT TCCTGAGTTA
TTAGCTGGAC GAGATATTCT GGGCCAAGCC CAAACCGGTA CGGGAAAAAC CGCAGCATTT
GCTCTACCAA TACTTAACAA CCTAGACCTA AGCCAAAAAG CGCCACAGGT TCTAGTACTT
GCACCTACCC GCGAACTAGC CATTCAGGTA GCAGAAGCAT TTCAATCATA CGCCCATCAC
TTGCCCGGCT TCCACATTCT ACCTATCTAC GGTGGCCAAG GGTACGACCA GCAAATACGC
GCACTGAAGC GCGGTGTTCA CGTTATTGTG GGCACACCCG GTCGTGTTAT GGACCATATG
CGTAAAGGCA CGCTAAAGCT AGACCAACTT AAAGTATTGG TACTAGACGA AGCCGACGAA
ATGTTGCGCA TGGGCTTTAT TGACGACGTT GAATGGGTAC TCACTCAAAC CCCACCTACC
CGCCAAATCG CGCTATTTTC GGCTACCATG CCTAAAGAGA TTGCTAAGGT TGCTAACAAA
TACCTTAACG ACCCAGCGCT TATTAAGATT GAAGTTAAAA CCCAAACCGC CGACACCATT
CGTCAGCGTT ACTGGGGCGT GAGCGGCCAC CACAAGCTAG ATGCCACTAC GCGCATACTC
GAAGCGGAAG AGTTCGACGC GATGATTATT TTCGTGCGTA CCAAAACCAC AACTATCGAG
CTGGCAGAAA AACTGGCCGC ACGCGGCTAC TCCAGTGCGG CACTTAACGG CGACATCTCG
CAAAACCTGC GTGAGCGCAC CGTAGAGAAG TTGAAAAAAG GCCAAATTGA TATTCTAGTT
GCTACCGATG TAGCGGCACG CGGCCTAGAC GTAGATCGCA TTAGCCACGT ACTAAACTAC
GATATTCCCT ACGATTCAGA AGCTTACGTG CACCGCATCG GCCGTACAGG CCGCGCTGGT
CGCTCGGGCG AAGCCATTCT TTTTGTTGCA CCGCGCGAAA TGCGTATGTT GCGCACAATA
GAAAAAGCTA CCCGCAAGCC TATCGAACTA ATGAAAATGC CAAGCACGGA TGATATTAAC
CAAATTCGTG TTGATCGCTT TAAACAAAAA ATATTGGATG CAGCCAAATC ACCAGGCCTA
GAGTTTTTCC GCAAGCTCGT TACCGAAATG CAACACGACA ACGAACTGGA TACTGCCGAC
ATAGCAGCAG CGCTTGCTCT TCTATACCAA GGTGACCAAC CACTATTGTT GGAAGACCGT
CCTCAGCGTC AACAGCGTGA ATTTAAAGAG CGCGATGGCG ACTTCGATAA ACGCGGCCGT
GGCGACAGAG ATGGCCGTGG ACGCGAAGGT CGAGATCGCG GTAAAGGCCG TGAAAAAGAC
GAAAACATGG AGACCTACCG TATAGAAGTA GGCCGCAAAG ACGGTGTTAA GCCTGGCGAC
ATTGTTGGCG CCATTGCCAA CGAAGCAAAT ATTAGCAGCA AGTTTATTGG CCACATTAAA
CTGCACGACG ACTTCAGCAC CGTAGACTTG CCATCAGGTA TGCCCAAAGA AGTTTTCGAA
ACCCTAAGCA AAACTTGGGT TTGTCAAAAG CAGCTGCGCA TTACCCGTGC AGAAGGCAAC
GCTGGCGGTG GTCGAGGCCG TGGTGGTGAC GACTTCAAAC GCAAAAAACG CCCAGCCAAT
AAAGATGGCG CACCGCGTAA ACCAAGAGCC AAAAAAGCCG ATAGCTAA
 
Protein sequence
MTESSPNFAQ LGLNEHILKA LTDVGYETPS PIQAKSIPEL LAGRDILGQA QTGTGKTAAF 
ALPILNNLDL SQKAPQVLVL APTRELAIQV AEAFQSYAHH LPGFHILPIY GGQGYDQQIR
ALKRGVHVIV GTPGRVMDHM RKGTLKLDQL KVLVLDEADE MLRMGFIDDV EWVLTQTPPT
RQIALFSATM PKEIAKVANK YLNDPALIKI EVKTQTADTI RQRYWGVSGH HKLDATTRIL
EAEEFDAMII FVRTKTTTIE LAEKLAARGY SSAALNGDIS QNLRERTVEK LKKGQIDILV
ATDVAARGLD VDRISHVLNY DIPYDSEAYV HRIGRTGRAG RSGEAILFVA PREMRMLRTI
EKATRKPIEL MKMPSTDDIN QIRVDRFKQK ILDAAKSPGL EFFRKLVTEM QHDNELDTAD
IAAALALLYQ GDQPLLLEDR PQRQQREFKE RDGDFDKRGR GDRDGRGREG RDRGKGREKD
ENMETYRIEV GRKDGVKPGD IVGAIANEAN ISSKFIGHIK LHDDFSTVDL PSGMPKEVFE
TLSKTWVCQK QLRITRAEGN AGGGRGRGGD DFKRKKRPAN KDGAPRKPRA KKADS