| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_3025 |
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| Symbol | |
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| ID | 3967689 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3864377 |
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| End bp | 3865549 |
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| Gene Length | 1173 bp |
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| Protein Length | 390 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637922122 |
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| Product | AraC family transcriptional regulator |
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| Protein accession | YP_528494 |
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| Protein GI | 90022667 |
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| COG category | [K] Transcription |
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| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000202158 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGATTCA CCATATTTAA TTTTCACGAT GTAATCCTTT GGATGACAGC CATGCAGTGC
TTGTTTTTTG CTTGCCTGCT AGTCGCCACC AACGAGGCCA AACTTAAGAG TACCTACTTT
CTGGCGGCTT TTTTGTTCGC CCATGCCTTT ATACCCGTAC ACGAGATGAT TCTGTGGGGC
GCGGAATTTA AGCTTATTGT GCGCGACCAT ATGCCCAGTA TTTATTTTAT TGGCGGGGCG
GCCTACTACT TGGATGGCCC TTTGCTGTAT TTGTGTATCA AAGCGCTGGT TTTTCGCGAT
TTTGAGCTTA AAAAGCGCGA TGTTTGGCAC TTGATTCCGG TACTAATGTT TATTGTTTTT
ATGCTGCTTA CCTTTTATAG GTTGCCCTTC GAGCAGCGCG ACTACCTAAT ACGCAGCGAA
GAATTTGTAT ACGGCAATGG CTATGTGTTG CTGGAGTTTA TGGCTAAAAG TATGCGCGTG
GTGTATTGCG TATTGTGCTT AGTGCTTATA AGTAAGTATA AAAAGCTGCG TGAATCCACC
CATTCCGATG TGCAAAAAAT GGATATTACA TGGGTGCATA TGCTGGTATT GGGTGTGTTA
GCCATTGTTA GCATGGAGAT GGTGCTAGCC ATAACCAAAG TTATTAACCT ATTTGAAAGT
TTCCACTGGG CAATTTTTGA GTGGATGGGC CTAAGCGGCT ACTACATGAT GTTTATACTT
GTGAACCTAT TGGTGTTTAC CGGTATTCGC TATTTTGCCA GCTTCGAGCC TGTGCATTTG
GCCGAGGCAA GTAAAAAGCC GCTTCAAGAG CACATGCTAA ACCCTGCTGT TGCGGCCAAA
ATAAGTGACG CGATGGCTAA AGATAAACCC TTTATGGAAC CAGATATCAC CCTCGATAAC
CTAGCGGCCA GCTTGGGCTA CCCGCCTAAA GACTTGTCTA TGGTTATTAA TCGACACTTT
GGTGTGAACT TCTATGAATT TATCAACCAA TATAGGGTAG ATGAAGCTAA GCGCATGCTT
GTATCCGAAG AATATAAAAA CACGACTATT ACAGATATCT ATTTAATGGT GGGGTTTAAT
AGTAAATCTG TGTTTTACAC GTTTTTCAAA AAGAAAATGG GGGTTACACC TTCGCAATAT
AGACGCAGCG GTGGTGATTC GCCCGCTGGT TAA
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| Protein sequence | MGFTIFNFHD VILWMTAMQC LFFACLLVAT NEAKLKSTYF LAAFLFAHAF IPVHEMILWG
AEFKLIVRDH MPSIYFIGGA AYYLDGPLLY LCIKALVFRD FELKKRDVWH LIPVLMFIVF
MLLTFYRLPF EQRDYLIRSE EFVYGNGYVL LEFMAKSMRV VYCVLCLVLI SKYKKLREST
HSDVQKMDIT WVHMLVLGVL AIVSMEMVLA ITKVINLFES FHWAIFEWMG LSGYYMMFIL
VNLLVFTGIR YFASFEPVHL AEASKKPLQE HMLNPAVAAK ISDAMAKDKP FMEPDITLDN
LAASLGYPPK DLSMVINRHF GVNFYEFINQ YRVDEAKRML VSEEYKNTTI TDIYLMVGFN
SKSVFYTFFK KKMGVTPSQY RRSGGDSPAG
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