Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2967 |
Symbol | |
ID | 3967806 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3769240 |
End bp | 3771513 |
Gene Length | 2274 bp |
Protein Length | 757 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637922064 |
Product | ornithine decarboxylase |
Protein accession | YP_528436 |
Protein GI | 90022609 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.482503 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.818361 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATAGGAA CAAAAGATAT GAAATTTCGT TTTCCCATTG TCGTCATCGA TGAAGATTTT AGGGCCGAAA ATATCTCTGG CTCGAGTATT CGCGATCTAG CCGAAGCAAT TGGTAACGAA GGGATGGAAG TTGTAGGCTT TACCAGCTAT GTAGACCTCA CCTCCTTTGC TCAGCAAGCA AGCCGTGCAT CGTGTTTTAT TGTTTCTATC GACGACGATG AGTTCGGCTC GGGTTCACCC GAAGAAGTGG CCGTACCTAT TGAGGCGTTG CGAAGCTTTA TATTAGCGGT TAGAAAGCGC AATACCGATA TTCCTATCTT CCTATACGGT GAAACCCGCA CTGCGCAGCA TATCCCCAAT GATGTATTGC GCGAGCTACA CGGCTTTATT CACATGTTTG AAGACACGCC CGAGTTTGTG GCGCGCCATA TTATCCGTGA GGCGAAAAAG TATTTGTCGT CACTCGCGCC ACCATTTTTT AATGCCCTTA TGGAGTACGC AAGCGATAGC TCATACTCGT GGCATTGCCC TGGGCACTCT GGTGGCGTAG CGTTTTTAAA AAGCCCCATT GGCCAAATGT TCCACCAGTT TTTTGGCGAG AACATGCTGC GCGCAGACGT GTGCAACTCG GTAGATGAGC TAGGTCAGCT GCTGGATCAC ACCGGCCCAG TTGCCGCGAG CGAGCAAAAT GCCGCCCGTA TATTTAACAG TGACCATTTG TTTTTTGTGA CTAACGGTAC TTCTACATCC AACAAAATCG TGTGGCACTC CACCGTAGCG CCTGGCGACA TTGTGGTAGT AGATAGAAAC TGCCACAAAT CGATTTTGCA CTCCATTATT ATGACCGGCG CCATCCCTGT GTTTTTAATG CCTACGCGCA ACCACTACGG CATTATTGGT CCTATTCCAA AGTCTGAATT TACTATGGAA TCTATCCGCG AAAAGATAGA AGCCAACCCG TTTGCGCGTA AAGCCAAAAA CAAAAAGCCC CGTATCCTCA CTATTACGCA AAGTACCTAC GACGGTATTT TGTATAACGT GGAGCAAATC AAAGAGATTC TTGGCTCCAA TATCGACACA TTGCATTTCG ACGAAGCTTG GTTGCCCCAT GCTACGTTCC ACGACTTTTA TAAAAACATG CACGCCATAG GCACAGACCG GCCGCGTTCG GACGACACCT TAGTATTCGC CACACAATCT ACCCATAAAC TGCTTGCTGG CTTATCGCAG GCGTCGCAAA TATTGGTGCA AAACGGCAAC AACCGTAAAT TGGACACTCA CCGTTTTAAC GAATCCTACT TAATGCATTC TTCCACCAGC CCGCAATATT CCATTATTGC CTCGTGCGAT GTGGCTGCAG CCATGATGGA GGCCCCCGGC GGTACCGCGC TAGTAGAAGA ATCGCTGCTA GAAGCGCTCG ATTTCCGCCG TGCCATGCGC AAAGTAGATG CAGAGTTTGG TGATGATGAC TGGTGGTTCC AAGTTTGGGG GCCTAAGGAT ATTGCCGAAG AGGGCATTGG CGAGCGCGAA GATTGGGTTA TACGCGAAGA TGATGACTGG CACGATTTCG GCAATATTGA ATCTGGCTTT AATATGCTCG ACCCCATCAA AGCCACTATC ATCACCCCCG GGCTAAACTT GAAGGGCGAC TTCGATGAGT TTGGTATTCC GGCTGCAATT GTAAGTAAAT ACTTGGCTGA GCACGGCATT ATCATCGAAA AAACCGGCCT GTATTCCTTC TTCATTATGT TCACTATCGG CATTACCAAA GGCCGATGGA ATTCCATGGT GACGGAATTG CAGCAATTTA AAGACGATTA CGACCAAAAC CTGCCTTTAT GGCGTGTTTT ACCGGAGTTC GTGAGTAAAC ACAAACAGTA TGAGCGCATT GGTTTGCGCG ATTTGTGTAC CCAAATTCAC GATATGTATA AAAAGTACGA CGTGGCTAAA ATTACCACTG ATATGTACCT ATCTAAAATA GAGCCTGCTA TGACCCCAGC AGATGCTTGG GCAAAAATGG CTCACCGCGA AATAGAGCGC GTATCTATTG ATGAAATAGA AGGCCGTATT ACTGCGATGT TAGTAACCCC TTACCCACCG GGTATACCTT TGATGGTGCC GGGCGAGCGA TTCAACAGCA CTATTATTAG CTACTTGAAG TTCGCGCGCG ATTTCAACTC TGCGTTACCG GGCTTTGAGA CAGACGTACA CGGTCTAGTG AAAGACACCG TAAACGGGGT AGAAGGCTAC TATATCGATG TAGTTAAAGA GTAA
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Protein sequence | MIGTKDMKFR FPIVVIDEDF RAENISGSSI RDLAEAIGNE GMEVVGFTSY VDLTSFAQQA SRASCFIVSI DDDEFGSGSP EEVAVPIEAL RSFILAVRKR NTDIPIFLYG ETRTAQHIPN DVLRELHGFI HMFEDTPEFV ARHIIREAKK YLSSLAPPFF NALMEYASDS SYSWHCPGHS GGVAFLKSPI GQMFHQFFGE NMLRADVCNS VDELGQLLDH TGPVAASEQN AARIFNSDHL FFVTNGTSTS NKIVWHSTVA PGDIVVVDRN CHKSILHSII MTGAIPVFLM PTRNHYGIIG PIPKSEFTME SIREKIEANP FARKAKNKKP RILTITQSTY DGILYNVEQI KEILGSNIDT LHFDEAWLPH ATFHDFYKNM HAIGTDRPRS DDTLVFATQS THKLLAGLSQ ASQILVQNGN NRKLDTHRFN ESYLMHSSTS PQYSIIASCD VAAAMMEAPG GTALVEESLL EALDFRRAMR KVDAEFGDDD WWFQVWGPKD IAEEGIGERE DWVIREDDDW HDFGNIESGF NMLDPIKATI ITPGLNLKGD FDEFGIPAAI VSKYLAEHGI IIEKTGLYSF FIMFTIGITK GRWNSMVTEL QQFKDDYDQN LPLWRVLPEF VSKHKQYERI GLRDLCTQIH DMYKKYDVAK ITTDMYLSKI EPAMTPADAW AKMAHREIER VSIDEIEGRI TAMLVTPYPP GIPLMVPGER FNSTIISYLK FARDFNSALP GFETDVHGLV KDTVNGVEGY YIDVVKE
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