| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2935 |
|---|
| Symbol | |
|---|
| ID | 3968025 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3727209 |
|---|
| End bp | 3729023 |
|---|
| Gene Length | 1815 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637922032 |
|---|
| Product | beta-galactosidase |
|---|
| Protein accession | YP_528404 |
|---|
| Protein GI | 90022577 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGATGCAT CCAATAATAA AACCGGTGTA GCCATTGCTA CGTTAACCGA AACCGCCGTT
GCCGTACCAG CGCAAAAAAA TGTAACGGTA ACGGCTAACG CTACAATAAA TAACCCAAAG
CTTTGGGGCC CGTTACCCAC GCAAAAACCG CAGCGGTATT TGGCCGTATC GCAAATAATG
CAAGCGGGTA TTGTTGTAGA TAATTACCAA ACCACTTTCG GCATACGCGA TATAGCGTTT
GACCCCGAGC GCGGCGTGGT GGTTAACGGT GAGCCTGTTT ATATTCAAGG GGTAAATCAA
CATCACGACT TAGGTGCGTT GGGCGCAGCA TTTAATGTGC GTGCAGCGGA GCGCCAATTA
GAGTTATTGC AGGAGATGGG CGTAAATGCC ATTCGTATGG CGCACAACCC GCCAGCGAAA
GAGTTGCTAG ACCTAACAGA CAAAATGGGC TTTTTAGTTA TCGACGAAAT ATTCGACTCT
TGGGAGCGCA AAAAAACACC GCTCGACTTT CACCTTATAT TTCCCGAATG GTCGGAACCA
GATGTGCGAA ATTTTATTCG CCGCGATCGC AACCACCCAT CGGTAATAGG CTGGAGCCTA
GGCAACGAAG TAGGCGAGCA ATATACCGGC GAAGCTGGCG CAGCAGTTGC AAAACGACTG
CATGATATTG CAAAAAGTGA AGACCCAACT CGACCCACTT CGGTTTCTAT TAATTTTGCC
AAGCCGGGTA TGGCGTTGCC GCCGGTTATG GATATGATCA ATTTGAATTA TCAAGGCGAA
GGTATTCGCA ATGCACCTGA ATACGTGCAC TTAAAAGGTA TTCGCACCGC GCCGCTTTAC
CCCAAGTTTC GCGAGGCTTA TCCAAATAAA GTAATAATAA GTAGCGAGAA CGCGGCCGCA
GTAAGTTCGC GGGGGGAATA CTTTTTTCCG GTAACCGCAG GTGCAAGTGC ACCAGTAGCA
GATGGTGCCG GTGGTGACCC TAATTCTGCG CACGTAAGCG CCTACGAGCT GTATACCGCG
CCGTTTGGTT CTTCTGCCGA TAAAGTGCTG GGTTCCCTTG CTGATCACCC TTATGTGGCT
GGAGGTTTTG TGTGGAGCGG TTGGGATTAT TTGGGCGAAC CCACCCCTTA CTATTCCGCG
CGCAGCTCGT ATTTTGGTGT AATTGATTTG GCGGGGTTTA AAAAAGATCG GTTTTATTTG
TACCAAGCGC ACTGGCGACC AGATTTACCC ATGGCCCATA TTCTGCCTCA CTGGAATTGG
CCCAATCGAG TTGGCGAAGT AACACCTGTG CATGTATTTA CATCTGGGGA TGAAGCTGAA
TTATTCCTAA ACGGTAAATC GCTAGGTAGA AAAATAAAAG GCAAAAATGC ATTTCGCATC
CGTTGGGACA ACGTTATTTA TCAGCCCGGC ACATTAAAAG TGGTGGCCTA TAAAAATGGT
AAGCAATGGG CGCAATCTGT TGTTGCCACT ACTGGCAGTG CTAGCCAATT ACAGTTAACC
GGAGATAGAA CCAGAATTCG AGCGGATGGC AAAGACCTCG CGTTTATAAC CGTAGATGTG
CAAGATGCCG ATGCCACAAA CGTGCCCACT GCCGATAATC CATTAAGCTT TACCCTAGCT
GGCCCTGGGG AAATTGTGGC CACGGATAAC GGTGACCCGA CGGATTTAAC GTCTTTTACT
TCGCATACCC GCAATGCTTT TAACGGTAAG TGTTTGGTTA TTGTTCGTGG TGTTGCGGGT
AAGCCGGGTG CGCTTACCTT AAATGTTACG GGGGCAGGGC TAAAAGCTGC ACAAACGGTA
ATAACAACTC ATTAA
|
|---|
| Protein sequence | MDASNNKTGV AIATLTETAV AVPAQKNVTV TANATINNPK LWGPLPTQKP QRYLAVSQIM
QAGIVVDNYQ TTFGIRDIAF DPERGVVVNG EPVYIQGVNQ HHDLGALGAA FNVRAAERQL
ELLQEMGVNA IRMAHNPPAK ELLDLTDKMG FLVIDEIFDS WERKKTPLDF HLIFPEWSEP
DVRNFIRRDR NHPSVIGWSL GNEVGEQYTG EAGAAVAKRL HDIAKSEDPT RPTSVSINFA
KPGMALPPVM DMINLNYQGE GIRNAPEYVH LKGIRTAPLY PKFREAYPNK VIISSENAAA
VSSRGEYFFP VTAGASAPVA DGAGGDPNSA HVSAYELYTA PFGSSADKVL GSLADHPYVA
GGFVWSGWDY LGEPTPYYSA RSSYFGVIDL AGFKKDRFYL YQAHWRPDLP MAHILPHWNW
PNRVGEVTPV HVFTSGDEAE LFLNGKSLGR KIKGKNAFRI RWDNVIYQPG TLKVVAYKNG
KQWAQSVVAT TGSASQLQLT GDRTRIRADG KDLAFITVDV QDADATNVPT ADNPLSFTLA
GPGEIVATDN GDPTDLTSFT SHTRNAFNGK CLVIVRGVAG KPGALTLNVT GAGLKAAQTV
ITTH
|
|---|
| |