| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2928 |
|---|
| Symbol | |
|---|
| ID | 3968018 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 3717738 |
|---|
| End bp | 3718910 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637922025 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_528397 |
|---|
| Protein GI | 90022570 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 39 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTTG TTGTTTTTAA TTTTCATGAC GTTGTACTCT GGATGACAGC CATGCAGTGC
CTGTTGTTTG CCGGCCTTTT ATTGGCCACG AATACAAGCA AAAACATAAG CATGTACTTT
CTAGCAGCCT TTCTTGTGGC CCACGCGCTA ATACCTTTGC ACGAGATGAT TCTGTGGGGC
GCAGAGTTCA AACTGCGAGT GCGCAACAAT TGGCCCGAGG TGTACTTTAT AGGCGCCGCC
GCCTATTACG TGGATGGTGC ACTGCTATTA ATGTGTATTA AATCGCTGGT GTTCCGCGAT
TTTAAGTTTA GAAAAACAGA CCTGCTGCAC CTTTTGCCTT TGGCTGCATT TATTGTGTTT
ATGAGCATTG CCTTTTATAG CCATAGCTAT GCCGAACGCT TGCACCTTAT TAATAGTGAA
ACCTTTGTGT ATGGTGCAGG TTACACCTTT ATGGAATTTT TCAGCAAGGT TGTACGCTTT
GGCTACTGCT TTTTATGCTT GCAGCTAGTG TTTAAATATA AGCACCTGCT TAAATCCACC
CACTCCAATG TAGAAAAAGT AGATATAACG TGGATAAGCA TGCTTGTTGT GGGCTTTATG
ATAGTAATGG GCCTAGAGGC CATACTCGCG TTTTCTAAGG TTATCTTTTT GTTTAAGCCC
TACCATATGG ATTTCTTCCA AAAAATGGGG CTTACCTGTT ACTACTCGCT ATTTCTGCTA
GTGAATCTTT TGGTGTTTAC AGGCATTCGT TACTTTTCTA GCTTCGAGCC AGTAAAAGAA
GAGCCAGAAA AACCAAAAGA CGGCGCCAAA AAGAAAATAT CCGATCACTT ACTTAACCCA
GACTTAGCCC GCGAAATTGA CGAAGCCATG CGCGGCACCA AATCCTATAT GGAACCCGAT
ATCACCCTCG AACATTTGGC CGACGAGCTA TCAATTACCG CACGCGACCT ATCCATGATT
ATTAACCGCC ACTTTGGTGT TAATTTTTAC GAATTTGTAA ACCGCTACCG TATAGAAGAA
GCGAAAGCAA TGCTGGCCTC GCCAAAGCAT AGCGATACAA CAATTACCGA TATATACCTA
GCGGTGGGGT TTAATAGTAA GTCGGTTTTT AATACTTTCT TTAAAAAACT AGTAGGCACA
ACACCTTCGC AATACCGCAA AGAGTTAGCA TAA
|
|---|
| Protein sequence | MNLVVFNFHD VVLWMTAMQC LLFAGLLLAT NTSKNISMYF LAAFLVAHAL IPLHEMILWG
AEFKLRVRNN WPEVYFIGAA AYYVDGALLL MCIKSLVFRD FKFRKTDLLH LLPLAAFIVF
MSIAFYSHSY AERLHLINSE TFVYGAGYTF MEFFSKVVRF GYCFLCLQLV FKYKHLLKST
HSNVEKVDIT WISMLVVGFM IVMGLEAILA FSKVIFLFKP YHMDFFQKMG LTCYYSLFLL
VNLLVFTGIR YFSSFEPVKE EPEKPKDGAK KKISDHLLNP DLAREIDEAM RGTKSYMEPD
ITLEHLADEL SITARDLSMI INRHFGVNFY EFVNRYRIEE AKAMLASPKH SDTTITDIYL
AVGFNSKSVF NTFFKKLVGT TPSQYRKELA
|
|---|
| |