| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2898 |
|---|
| Symbol | |
|---|
| ID | 3968066 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3674101 |
|---|
| End bp | 3676275 |
|---|
| Gene Length | 2175 bp |
|---|
| Protein Length | 724 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637921995 |
|---|
| Product | radical SAM family protein |
|---|
| Protein accession | YP_528367 |
|---|
| Protein GI | 90022540 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1032] Fe-S oxidoreductase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.041487 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCTA TAAAAGTCGC CCCACAGCTT CAATCCTTTC CTAAATACTG GGCATCTTGC
TTCGACCCCG CGCCGTTCCT GCCTATGAGC CGTGCCGAAA TGGATGAGCT GGGCTGGGAT
AGTTGCGACA TTATTATTGT AAATGGCGAT GCCTACGTTG ATCACCCAAG CTTTGGGGGT
GCCCTTATAG GCCGCTTGCT AGAGGCGCAG GGCTTTCGTG TAGGTATGAT TGCGCAGCCA
GACTGGACCG ACGTGGAGTC TTTTCGGGTA TTGGGCGAGC CCAACCTATT TTTTGGCATA
ACGGCGGGCA ACATGGATTC CATGATCAAC CGCTACACCG CCGACTTGCG TATGCGCCAC
GACGATGCTT ACACGCCCAA TAATGAAGGC GGTAAACGCC CTGAACGAGC GGTAACGGTA
TATAGCCACC GCTGTCGCGA AGCATATAAA GGCGTACCAA TTATATTGGG CGGTATAGAG
GCGAGTTTAC GCCGCATAGC GCAATACGAT TATTGGAGCG ATGAGGTTCG CCGCTCTGTA
CTGGTGGATT CCGGTGCAGA TATATTGCTG TACGGCAATG CTGAGCGCGC CATTATTGAA
TTGGCCGTGG CGCTAGGGGC TGGCGAAAAA ATAGAAGATT TAACATCAAT TCGCGGCACT
ACTATTATTC GCAACGAAGT GCCCGAAGGC TGGAGTGTAA TTGACTCTAC CCGTATCGAC
TGGCCTAAAA ATATTGATGA AATACCCAAT CCTTACGCCA TGGAAGGGAT GGGCAATAAA
ACTGGTGATG GCGAGTGTAA ATCTAACGCC AACCAAGCGG CAGTGCAGGG TGGTGAAAGA
GATTTAATGA TGGAAGAGCC CCAAATAGAG CCCATCCGCA TTATTCCTAT GCCATTGCAC
AGAAAAGCCA ACCTAGATGA CGACAAAACT GCAATACGTT TGCCGTCCTT CGAAAAGGTA
AGCAAAGATC GCGCGCTTTA TTCCCACGCG TCGCGGGTAT TGCACTTAGA ATCTAACCCG
CAAAATGCGC GCACACTGGT GCAAAAGCAT GGCAAGCGCG AAGTGTGGGT AAACCCGCCA
CCTATTCCGT TATCTACCCC AGAAATGGAC GCTGTATTTG CGCTGCCTTA TGCGCGCGTA
CCGCACCCAA GCTACGGTAA AAATAAAATA CCCGCTTACG ACATGATTAA AACGTCGGTA
AATATTATGC GCGGGTGTTT TGGTGGCTGT ACTTTTTGTT CTATTACCGA GCACGAAGGC
CGCGTTATTC AAAGCCGCTC GGAAGAAAGT ATTTTGCGCG AGATAGAAGA TATTCGCGAT
AAAGTTCCGG GCTTTAGTGG CACCATTTCG GATTTAGGCG GGCCTACGGC CAACATGTAT
ATGCTTAACT GCAAAGACGA GCAAATCCAC GCCGCCTGCC GTCGTTTGTC TTGCGTGTAC
CCAACAATAT GTAAAAACTT GGTTACCGAC CACTCGCCAA CAACAAATTT GTACCGCAAA
GCGCGCAAAA TACCCGGCAT TAAAAAGGTC GCCATTGCCT CTGGCTTGCG CTATGACTTG
GCCGTAGAAG ACCCAGAGTA TATTAAAGAA TTGGTTACTC ACCACGTGGG CGGCTACTTA
AAAATTGCCC CCGAGCACAC CGAAGATGGC CCGCTACAAA AAATGATGAA GCCGGGCATT
GGTACCTTTT TTGAGTTTAA AAAGTTATTT GATAAATACT CGAAAGAAGC GGGTAAAAAA
CAATACCTTA TTCCGTACTT TATAGCCGCA CACCCAGGCT GTGAAGATGA AGATATGGTT
AACCTTGCCC TGTGGTTAAA AGACAATAAT TACAGCTTGG ATCAAGTACA AACCTTCTAC
CCCTCGCCAA TGAGTTTGGC CACGGCCATG TACCATTCCG AGAAAAACCC ACTTAAAAAA
GTAACCTACA AAAGCGATAG CGTGCGTACC CCGCGCGACT TAAAACAGCG TCGCTTTCAG
AAAGCCGTGT TGCGTTACCA CGATCAAGCA AACTGGGATA TGTTGCGCGA AGAATTTATT
CGCATGGGCA GAAAAGACTT AATTGGTAAT GGCCCCAAAG CCTTGGTGCC GTTTGCCAGC
CAAATTAAAG GTGGCGCTAA AGCAAGGCCC GTGGGTAAGG CGCCAGTGCG CAAAGGCCGT
GCCAAACGCA GGTAG
|
|---|
| Protein sequence | MQPIKVAPQL QSFPKYWASC FDPAPFLPMS RAEMDELGWD SCDIIIVNGD AYVDHPSFGG
ALIGRLLEAQ GFRVGMIAQP DWTDVESFRV LGEPNLFFGI TAGNMDSMIN RYTADLRMRH
DDAYTPNNEG GKRPERAVTV YSHRCREAYK GVPIILGGIE ASLRRIAQYD YWSDEVRRSV
LVDSGADILL YGNAERAIIE LAVALGAGEK IEDLTSIRGT TIIRNEVPEG WSVIDSTRID
WPKNIDEIPN PYAMEGMGNK TGDGECKSNA NQAAVQGGER DLMMEEPQIE PIRIIPMPLH
RKANLDDDKT AIRLPSFEKV SKDRALYSHA SRVLHLESNP QNARTLVQKH GKREVWVNPP
PIPLSTPEMD AVFALPYARV PHPSYGKNKI PAYDMIKTSV NIMRGCFGGC TFCSITEHEG
RVIQSRSEES ILREIEDIRD KVPGFSGTIS DLGGPTANMY MLNCKDEQIH AACRRLSCVY
PTICKNLVTD HSPTTNLYRK ARKIPGIKKV AIASGLRYDL AVEDPEYIKE LVTHHVGGYL
KIAPEHTEDG PLQKMMKPGI GTFFEFKKLF DKYSKEAGKK QYLIPYFIAA HPGCEDEDMV
NLALWLKDNN YSLDQVQTFY PSPMSLATAM YHSEKNPLKK VTYKSDSVRT PRDLKQRRFQ
KAVLRYHDQA NWDMLREEFI RMGRKDLIGN GPKALVPFAS QIKGGAKARP VGKAPVRKGR
AKRR
|
|---|
| |