Gene Sde_2804 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2804 
Symbol 
ID3968283 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3539029 
End bp3539970 
Gene Length942 bp 
Protein Length313 aa 
Translation table11 
GC content48% 
IMG OID637921901 
ProductLysR family transcriptional regulator 
Protein accessionYP_528273 
Protein GI90022446 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones33 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00000208854 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATTAACT ACAAGCAACT TTATTATTTT TGGGCTGTGG CGAAACACGG GGGCATAACC 
CGCGCATCGG AACAGCTACA TCTCACCCCA CAAACCATAA GCGGGCAATT GAGTGAGCTG
GAAAAGGGTT TTGAAGCCAC ACTGTTTGAT CGCGTTGGCC GCAGGCTTGA ACTCACCGCC
TTAGGCAAAC TCGCATACTC TTACGCCGAT GAGATATTCC AAGTAGGCAA AGAGCTGGAA
AACGCAATTA CTAAAAAAAA TAACATTCGC GAGCGTGTTT TTAGGGTGGG TATTTCTAGC
TCGGTCCCTA AATCTATCGC TTACAAACTG TTGTCGCCAG CCTTAGAGAA AGACCCCGGC
ATACACCTTG TGTGCAAGGA CAATAACCTC GAACACCTAT TTGCCGATTT AGCGCTTCAC
AAAACCGATT TGGTTATTGC CGATAAGCCT TTGTCCTCCG ACGTAGGTAT TAAAGGCTAT
AACCATTTAC TGGGCGAATG CCCTATTGCT TTTTATGCCA CACCTGCACT CGCTGAGCGC
TACCGCCCTA ACTTTCCACA CTCTCTTAAC AACGCCCCAC TGCTACTTCC TGGCGAAGAT
AGCGCCTTGC GCATTATGTT GCAGCGCTGG CTATCGCAAC AGAGCATCAA CCCTATAGTT
AAAGGTGAGT TTGACGATAC CGCATTAATG AAGGCGTTTG CCCAGGAAGG GGTGGGCATA
TTCCCAGGCC CAACCGTTAT CGACAAGGAA TCCCAGAAGG AGCATGGCGT AGAAATGCTA
GGGGAGATAA CCGAGTTAAA AATTCGCTAC TACGCAATTT CTGCCGAGCG CAAACTACGC
CATCCCTCGG TTGTGGCTAT TAGTGAAGCC GCGCAGCAGA ATTTGTTCGC TCCACATCAA
GCTGCACGGA ATATAGACAT GGATGGACAT CAGGATATCT AA
 
Protein sequence
MINYKQLYYF WAVAKHGGIT RASEQLHLTP QTISGQLSEL EKGFEATLFD RVGRRLELTA 
LGKLAYSYAD EIFQVGKELE NAITKKNNIR ERVFRVGISS SVPKSIAYKL LSPALEKDPG
IHLVCKDNNL EHLFADLALH KTDLVIADKP LSSDVGIKGY NHLLGECPIA FYATPALAER
YRPNFPHSLN NAPLLLPGED SALRIMLQRW LSQQSINPIV KGEFDDTALM KAFAQEGVGI
FPGPTVIDKE SQKEHGVEML GEITELKIRY YAISAERKLR HPSVVAISEA AQQNLFAPHQ
AARNIDMDGH QDI