Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2804 |
Symbol | |
ID | 3968283 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 3539029 |
End bp | 3539970 |
Gene Length | 942 bp |
Protein Length | 313 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637921901 |
Product | LysR family transcriptional regulator |
Protein accession | YP_528273 |
Protein GI | 90022446 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000208854 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTAACT ACAAGCAACT TTATTATTTT TGGGCTGTGG CGAAACACGG GGGCATAACC CGCGCATCGG AACAGCTACA TCTCACCCCA CAAACCATAA GCGGGCAATT GAGTGAGCTG GAAAAGGGTT TTGAAGCCAC ACTGTTTGAT CGCGTTGGCC GCAGGCTTGA ACTCACCGCC TTAGGCAAAC TCGCATACTC TTACGCCGAT GAGATATTCC AAGTAGGCAA AGAGCTGGAA AACGCAATTA CTAAAAAAAA TAACATTCGC GAGCGTGTTT TTAGGGTGGG TATTTCTAGC TCGGTCCCTA AATCTATCGC TTACAAACTG TTGTCGCCAG CCTTAGAGAA AGACCCCGGC ATACACCTTG TGTGCAAGGA CAATAACCTC GAACACCTAT TTGCCGATTT AGCGCTTCAC AAAACCGATT TGGTTATTGC CGATAAGCCT TTGTCCTCCG ACGTAGGTAT TAAAGGCTAT AACCATTTAC TGGGCGAATG CCCTATTGCT TTTTATGCCA CACCTGCACT CGCTGAGCGC TACCGCCCTA ACTTTCCACA CTCTCTTAAC AACGCCCCAC TGCTACTTCC TGGCGAAGAT AGCGCCTTGC GCATTATGTT GCAGCGCTGG CTATCGCAAC AGAGCATCAA CCCTATAGTT AAAGGTGAGT TTGACGATAC CGCATTAATG AAGGCGTTTG CCCAGGAAGG GGTGGGCATA TTCCCAGGCC CAACCGTTAT CGACAAGGAA TCCCAGAAGG AGCATGGCGT AGAAATGCTA GGGGAGATAA CCGAGTTAAA AATTCGCTAC TACGCAATTT CTGCCGAGCG CAAACTACGC CATCCCTCGG TTGTGGCTAT TAGTGAAGCC GCGCAGCAGA ATTTGTTCGC TCCACATCAA GCTGCACGGA ATATAGACAT GGATGGACAT CAGGATATCT AA
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Protein sequence | MINYKQLYYF WAVAKHGGIT RASEQLHLTP QTISGQLSEL EKGFEATLFD RVGRRLELTA LGKLAYSYAD EIFQVGKELE NAITKKNNIR ERVFRVGISS SVPKSIAYKL LSPALEKDPG IHLVCKDNNL EHLFADLALH KTDLVIADKP LSSDVGIKGY NHLLGECPIA FYATPALAER YRPNFPHSLN NAPLLLPGED SALRIMLQRW LSQQSINPIV KGEFDDTALM KAFAQEGVGI FPGPTVIDKE SQKEHGVEML GEITELKIRY YAISAERKLR HPSVVAISEA AQQNLFAPHQ AARNIDMDGH QDI
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