Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2798 |
Symbol | |
ID | 3968277 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 3529208 |
End bp | 3531268 |
Gene Length | 2061 bp |
Protein Length | 686 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637921895 |
Product | TonB-dependent receptor |
Protein accession | YP_528267 |
Protein GI | 90022440 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.00000000816891 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.0000136093 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGATTTCCC GACTGTCCCC TTTGGTAGCT TTTATCTGCC TAACTACTAC ATCTGTTGCT TTTGCCGAGG AAGGCACCAG CTCTAAGCTG GAAGAAACCT TTATATATGG TGAGCAGGGA AAGACAGACA CTGCAACAAA ACTTGAGCTA AGTATTTTTG AAACCCCGCA AACCGTTACC GCGGTTTCTA GAGCGCAGCT GGACGAATTT GCGTTAACCA GCATTTCTGA TGTGCTTAAC TATGCACCAG GCATTACCGT AGAAGAAGTT GAAACTAATC GAACCTACTA CACTGCGCGC GGCTTCGATA TTGTTAACTT TCAATACGAT GGTGTGGGCA TTCCTTTTAT TAGCGGCTTG AATTTAGGCC AACAAGATAC GGCTATTTAT GAAAAAGTTG AGATTGTTAA AGGCTCTGCA GGCTTGATTA CTGGCTTGGC GAACCCTTCT GCAACAATTA ACTATGTACG CAAACGACCA ACTGATGATT TGCAAGCATC TGCTGCACTT AGCCTTGGAC AGTGGCAAAA CAAGCGCGCC GAAGTGGATA TAGCAACTGC ACTTTCAGAT TCAGTGCGAG CACGAGCAGT TGTGGCCTAT GACAATGGTG AAACCCATTT AGATCGCAAT AAAAACACAA CTCAATTGGG CTACGGCATT TTTGAGTTCG ACTTAAGCGA TAACACCATG CTAACGGCGG GATACAGTTA CGACCGCAAT GAATCTAAAG GTGTTTTATG GGGTGCGTTG CCCTTACTTT ATACCGATGG CTCGCGTACA AATTATGACG TATCTACCAG TAATGCGCCC GACTGGACGT TTGCCAACAC TACGCAAAAA CAAAGTTTTG CAGAGCTGGA ACATCACATA AATCAAAATT GGACAGCGCA TTTACACCTT ACGCATAACC AATCAACTTA CGATTCAAAC TTATTTTACG TATACGGTAC ACCCGAGCGC GAAACCGAAG TTGGACTATT TGGCTATGCC AGTGCCTATG AGCGCGATGA AGAGCAATTA AATGTAGATT TGTTTGTATC TGGCGATTTT AGCCTGTTTG AAAGAAACCA CCAGCTAGTA CTTGGTTACA GCGATTCTGA TACCAACCTT GCCGAAGCAT CGCATTACAA TAATACCGAT GGCTTCCCGG TACTTGGCGC CGACTGGGCC AAAGGCAATA CTCCAGCGAT GGATTTTCCT GATCACGACC CCGCCACAAG CTCCACCGAT ATAGACCTAA GCCAAAAAGC GTTTTATGTG GCTGCGCGTT TAAATGTACT TGATAACCTA GCGTTATTAT TGGGTGCAAG AAATACAGAG CTTGAGCAAA CAGGCGTAAG CTACGGCGGC GAATCGAATG CGAGTGCAAA TAAAACTGTA CCCTATTTCG GGGTTACCTA TGCATTAATC GACAGTCTAA TGTTGTACTC AAGTTACAGC GAAGTATTTA AGCAACAAAC TTGGGTGAAC AGCGAGCTGC AACCGCTTGG TGCTACCGTG GGGGCATCCT CTGAATTAGG GTTGAAAAAG TCGTTTAATG ACGAGCGCTC AGTGCTAACA CTTGCAGCAT TTTCATCTGA ACAAAGTGAT TTTGGTGTAT TTGTAGCTCG AAATGAAAGC GGCATTGCAA TCTACCGAAC TGCGGAGTTA AGCAGCTCTG GCTACGAGCT GGAATTTTCT GGTGAGGTTA CTGATGGCTT AAACATTGGC GCCGGCTTAA CGGTATTGGA TATTAAAGAA GACGACGAAG ATGCGCGTCC GTTCATTCCC ACACAGCTTT TAAAATTCTC GGCTTCATAT GTATTGCCTA GTCTGCCTGA CTTAAAAATT GGTAGCTCGG TTAAATGGCA GAATGAAACT ACCACAAGCG ATGGATCGTA TACCCAAGAT GCCTTTACCT TACTAGACAT TGCTGCGCAC TATCAAATTA ACGCCCAGTT AAGTGTGTCG CTAAACCTAG AAAACCTAGG TAACGAGAAG TATTTAAACA GCCTGTATTG GAGCCAAGCG TATTTCGGCG AGCCGCGCAA CATGAGTGCC ACAGTACGCT GGAAGCTATA A
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Protein sequence | MISRLSPLVA FICLTTTSVA FAEEGTSSKL EETFIYGEQG KTDTATKLEL SIFETPQTVT AVSRAQLDEF ALTSISDVLN YAPGITVEEV ETNRTYYTAR GFDIVNFQYD GVGIPFISGL NLGQQDTAIY EKVEIVKGSA GLITGLANPS ATINYVRKRP TDDLQASAAL SLGQWQNKRA EVDIATALSD SVRARAVVAY DNGETHLDRN KNTTQLGYGI FEFDLSDNTM LTAGYSYDRN ESKGVLWGAL PLLYTDGSRT NYDVSTSNAP DWTFANTTQK QSFAELEHHI NQNWTAHLHL THNQSTYDSN LFYVYGTPER ETEVGLFGYA SAYERDEEQL NVDLFVSGDF SLFERNHQLV LGYSDSDTNL AEASHYNNTD GFPVLGADWA KGNTPAMDFP DHDPATSSTD IDLSQKAFYV AARLNVLDNL ALLLGARNTE LEQTGVSYGG ESNASANKTV PYFGVTYALI DSLMLYSSYS EVFKQQTWVN SELQPLGATV GASSELGLKK SFNDERSVLT LAAFSSEQSD FGVFVARNES GIAIYRTAEL SSSGYELEFS GEVTDGLNIG AGLTVLDIKE DDEDARPFIP TQLLKFSASY VLPSLPDLKI GSSVKWQNET TTSDGSYTQD AFTLLDIAAH YQINAQLSVS LNLENLGNEK YLNSLYWSQA YFGEPRNMSA TVRWKL
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