Gene Sde_2798 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2798 
Symbol 
ID3968277 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3529208 
End bp3531268 
Gene Length2061 bp 
Protein Length686 aa 
Translation table11 
GC content45% 
IMG OID637921895 
ProductTonB-dependent receptor 
Protein accessionYP_528267 
Protein GI90022440 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4773] Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000816891 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000136093 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGATTTCCC GACTGTCCCC TTTGGTAGCT TTTATCTGCC TAACTACTAC ATCTGTTGCT 
TTTGCCGAGG AAGGCACCAG CTCTAAGCTG GAAGAAACCT TTATATATGG TGAGCAGGGA
AAGACAGACA CTGCAACAAA ACTTGAGCTA AGTATTTTTG AAACCCCGCA AACCGTTACC
GCGGTTTCTA GAGCGCAGCT GGACGAATTT GCGTTAACCA GCATTTCTGA TGTGCTTAAC
TATGCACCAG GCATTACCGT AGAAGAAGTT GAAACTAATC GAACCTACTA CACTGCGCGC
GGCTTCGATA TTGTTAACTT TCAATACGAT GGTGTGGGCA TTCCTTTTAT TAGCGGCTTG
AATTTAGGCC AACAAGATAC GGCTATTTAT GAAAAAGTTG AGATTGTTAA AGGCTCTGCA
GGCTTGATTA CTGGCTTGGC GAACCCTTCT GCAACAATTA ACTATGTACG CAAACGACCA
ACTGATGATT TGCAAGCATC TGCTGCACTT AGCCTTGGAC AGTGGCAAAA CAAGCGCGCC
GAAGTGGATA TAGCAACTGC ACTTTCAGAT TCAGTGCGAG CACGAGCAGT TGTGGCCTAT
GACAATGGTG AAACCCATTT AGATCGCAAT AAAAACACAA CTCAATTGGG CTACGGCATT
TTTGAGTTCG ACTTAAGCGA TAACACCATG CTAACGGCGG GATACAGTTA CGACCGCAAT
GAATCTAAAG GTGTTTTATG GGGTGCGTTG CCCTTACTTT ATACCGATGG CTCGCGTACA
AATTATGACG TATCTACCAG TAATGCGCCC GACTGGACGT TTGCCAACAC TACGCAAAAA
CAAAGTTTTG CAGAGCTGGA ACATCACATA AATCAAAATT GGACAGCGCA TTTACACCTT
ACGCATAACC AATCAACTTA CGATTCAAAC TTATTTTACG TATACGGTAC ACCCGAGCGC
GAAACCGAAG TTGGACTATT TGGCTATGCC AGTGCCTATG AGCGCGATGA AGAGCAATTA
AATGTAGATT TGTTTGTATC TGGCGATTTT AGCCTGTTTG AAAGAAACCA CCAGCTAGTA
CTTGGTTACA GCGATTCTGA TACCAACCTT GCCGAAGCAT CGCATTACAA TAATACCGAT
GGCTTCCCGG TACTTGGCGC CGACTGGGCC AAAGGCAATA CTCCAGCGAT GGATTTTCCT
GATCACGACC CCGCCACAAG CTCCACCGAT ATAGACCTAA GCCAAAAAGC GTTTTATGTG
GCTGCGCGTT TAAATGTACT TGATAACCTA GCGTTATTAT TGGGTGCAAG AAATACAGAG
CTTGAGCAAA CAGGCGTAAG CTACGGCGGC GAATCGAATG CGAGTGCAAA TAAAACTGTA
CCCTATTTCG GGGTTACCTA TGCATTAATC GACAGTCTAA TGTTGTACTC AAGTTACAGC
GAAGTATTTA AGCAACAAAC TTGGGTGAAC AGCGAGCTGC AACCGCTTGG TGCTACCGTG
GGGGCATCCT CTGAATTAGG GTTGAAAAAG TCGTTTAATG ACGAGCGCTC AGTGCTAACA
CTTGCAGCAT TTTCATCTGA ACAAAGTGAT TTTGGTGTAT TTGTAGCTCG AAATGAAAGC
GGCATTGCAA TCTACCGAAC TGCGGAGTTA AGCAGCTCTG GCTACGAGCT GGAATTTTCT
GGTGAGGTTA CTGATGGCTT AAACATTGGC GCCGGCTTAA CGGTATTGGA TATTAAAGAA
GACGACGAAG ATGCGCGTCC GTTCATTCCC ACACAGCTTT TAAAATTCTC GGCTTCATAT
GTATTGCCTA GTCTGCCTGA CTTAAAAATT GGTAGCTCGG TTAAATGGCA GAATGAAACT
ACCACAAGCG ATGGATCGTA TACCCAAGAT GCCTTTACCT TACTAGACAT TGCTGCGCAC
TATCAAATTA ACGCCCAGTT AAGTGTGTCG CTAAACCTAG AAAACCTAGG TAACGAGAAG
TATTTAAACA GCCTGTATTG GAGCCAAGCG TATTTCGGCG AGCCGCGCAA CATGAGTGCC
ACAGTACGCT GGAAGCTATA A
 
Protein sequence
MISRLSPLVA FICLTTTSVA FAEEGTSSKL EETFIYGEQG KTDTATKLEL SIFETPQTVT 
AVSRAQLDEF ALTSISDVLN YAPGITVEEV ETNRTYYTAR GFDIVNFQYD GVGIPFISGL
NLGQQDTAIY EKVEIVKGSA GLITGLANPS ATINYVRKRP TDDLQASAAL SLGQWQNKRA
EVDIATALSD SVRARAVVAY DNGETHLDRN KNTTQLGYGI FEFDLSDNTM LTAGYSYDRN
ESKGVLWGAL PLLYTDGSRT NYDVSTSNAP DWTFANTTQK QSFAELEHHI NQNWTAHLHL
THNQSTYDSN LFYVYGTPER ETEVGLFGYA SAYERDEEQL NVDLFVSGDF SLFERNHQLV
LGYSDSDTNL AEASHYNNTD GFPVLGADWA KGNTPAMDFP DHDPATSSTD IDLSQKAFYV
AARLNVLDNL ALLLGARNTE LEQTGVSYGG ESNASANKTV PYFGVTYALI DSLMLYSSYS
EVFKQQTWVN SELQPLGATV GASSELGLKK SFNDERSVLT LAAFSSEQSD FGVFVARNES
GIAIYRTAEL SSSGYELEFS GEVTDGLNIG AGLTVLDIKE DDEDARPFIP TQLLKFSASY
VLPSLPDLKI GSSVKWQNET TTSDGSYTQD AFTLLDIAAH YQINAQLSVS LNLENLGNEK
YLNSLYWSQA YFGEPRNMSA TVRWKL