| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2736 |
|---|
| Symbol | |
|---|
| ID | 3968369 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3466966 |
|---|
| End bp | 3467373 |
|---|
| Gene Length | 408 bp |
|---|
| Protein Length | 135 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637921836 |
|---|
| Product | helix-turn-helix, AraC type |
|---|
| Protein accession | YP_528208 |
|---|
| Protein GI | 90022381 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0735] Fe2+/Zn2+ uptake regulation proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.0000081899 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATAG AAAATCAAGA GTTGAGAAAA GCCGGCCTCA AAGTCACCCT TCCGAGGGTT
AAGATTCTGC AAATCATGGA AAATTCCCAA GATAGACATT TAAGTGCAGA AGATGTGTAT
AAAGCCCTGT TGGAAGCTGG TGAAGATGTT GGTTTGGCCA CCGTATATCG CGTGTTAACC
CAATTTGAGA GTGCGGGATT GGTAGAACGT CATAATTTTG ATGGCGGCCA TTCGGTGTTT
GAGCTGGATA GAGGTGATCA CCACGATCAT ATGGTGTGTG TTGAATCTGG CAAAGTCATT
GAGTTCCACA ACGAGCGTAT TGAACAGCTG CAAGAAGAAA TTGCTGCAGA GCATGGCTAC
GAAATTAGCG GCCACAGCTT GGTGCTTTAC GTAAAACCTA AAAAGTAA
|
|---|
| Protein sequence | MAIENQELRK AGLKVTLPRV KILQIMENSQ DRHLSAEDVY KALLEAGEDV GLATVYRVLT
QFESAGLVER HNFDGGHSVF ELDRGDHHDH MVCVESGKVI EFHNERIEQL QEEIAAEHGY
EISGHSLVLY VKPKK
|
|---|
| |