| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2706 |
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| Symbol | truB |
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| ID | 3968448 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3433028 |
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| End bp | 3433969 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637921804 |
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| Product | tRNA pseudouridine synthase B |
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| Protein accession | YP_528178 |
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| Protein GI | 90022351 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.106094 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGGTAATC GTAAAAGACC TGGTCGCCCA ATATCGGGCG TAATAGTTAT AGATAAACCG
GCTGGAGATT CCTCCAACGG CGTATTGCAA AGGGTTAAAC GCCTTTTTTT CGCAAATAAA
GCAGGCCACA CAGGCAGTTT AGACCCGCTC GCAACAGGGG TTTTACCGGT TTGTTTTGGC
GATGCCACCA AATTCTCGCA GTTTTTGCTC GATTCCGATA AAGAATATGT AAGCACATTT
CGCTTTGGCG AGGTTACCGA TACCGCCGAT TCAGACGGCG AAGTGTTGGA AAGCATTGAT
GCCTCTAAGC TTACTAAGGC TGACGTGCTC AAAGCTATTA AGGCTTATAT TGGCGATATC
GATCAGGTTC CCCCTATGTA TTCTGCGCTT AAGCGCAACG GCCAGCCTTT ATACAAGTTG
GCGCGTCAGG GTATAGAGGT GGAGCGAGAG CCACGTCCAG TAACTGTTTA CGAATTCGAA
TTACTGGCAT TTAGACCGGG GGCAGTAGCT GAGGCCGATG TACGGGTCTT TTGCAGTAAA
GGTACATACA TTCGAAGCTT GGCATCGGAT ATAGGCGCAG ATTTAGAGCT TGGCGGTCAC
GTAGCTAAAT TACGCCGTAC CCAAGCCGGC CCTTTTACTA TCGACCAGTC GATAACTATT
GAAGAACTAG AGCAAGAGCG CGGCGAAAGG CTTGCTGAAG TGCTCGATCA TCACTTATTG
CCAACTGATA TAGCGGTTGC GGATTTCCCA AGTTTGGAAT TAGACGACAA TAGTGCGTTC
TACTTCTCTA GAGGGCAGGC GGTTATGGAC TCTCGGGTCT ATCGCTTAGG GGATGAAGGT
GATAAAGTGC GCGTCTTTGA CTCCAGCGGA AAGTTCTATG GAGTGGCGGA AATCACCGAT
GAAGGCACCG TGGCGCCCAA GCGCTTAGTG AGTCAATCGT AG
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| Protein sequence | MGNRKRPGRP ISGVIVIDKP AGDSSNGVLQ RVKRLFFANK AGHTGSLDPL ATGVLPVCFG
DATKFSQFLL DSDKEYVSTF RFGEVTDTAD SDGEVLESID ASKLTKADVL KAIKAYIGDI
DQVPPMYSAL KRNGQPLYKL ARQGIEVERE PRPVTVYEFE LLAFRPGAVA EADVRVFCSK
GTYIRSLASD IGADLELGGH VAKLRRTQAG PFTIDQSITI EELEQERGER LAEVLDHHLL
PTDIAVADFP SLELDDNSAF YFSRGQAVMD SRVYRLGDEG DKVRVFDSSG KFYGVAEITD
EGTVAPKRLV SQS
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