Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2704 |
Symbol | |
ID | 3968446 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3430224 |
End bp | 3432392 |
Gene Length | 2169 bp |
Protein Length | 722 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637921802 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_528176 |
Protein GI | 90022349 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0597018 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.0425513 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCAATGGG GCACTCCAAG TCAAAAGGAT AAAAAAGTGA ATCCGGTAAT TAAAAAATTT CAATATGGTA ATGACACTGT AACTTTAGAA ACAGGTCGCA TTGCGCGTCA GGCTTCTGGT GCAGTATTAG CTTCAATGGG CCAAACTTCA GTATTAGTTG CTGTTACAGG TTCTAAAGAA GCCAAGCCAG GGCAAGATTT CTTCCCGCTG TCTGTTCATT ATCAAGAAAA AGCATATGCT GCGGGTAAAA TCCCCGGTGG TTTTTTCAAG CGCGAAGCGC GCCCTTCAGA GAAAGAGACT TTAACGTCTC GTTTAATCGA CCGTCCGATT AGACCATTGT TTCCAAACGG TTTTCTAAAT GAAGTGCAGG TAGTTTGTAC TGTTATTTCT GCAGAGAAAG ACGTTGATCC AGATATTGTT GCCATGATAG GTACCTCTGC TGCTCTCGCT ATTTCTGGTA TTCCATTTAA CGGCCCAATT GGTGCCGCGC GTGTAGGTTA TACGCAAGAG TCGGGCTACT TATTAAACCC AACTTACTCA ACTTTAAAAA CGTCTGAGCT AGACATGGTT GTAGCGGGTA CTGCCGATGC AGTGCTTATG GTTGAATCTG AAGCTAAAGA GCTGCCAGAA GATATTATGC TAGGTGCAGT GCTATACGCT CACCAAGAAA TGCAAGCTGT TGTGCAAGCT GTAGCTGAAC TTGCCAAAGA CGCCGCCAAA CCTGTTTGGG ATTGGAAGCC AGAAGAAGTT AATGCAGAGC TAAAGGCTAA AGTTGAGCAC GGTTTTGCGG ATTCTGTAGG TGTTGCTTAC CGCATTACCG ACAAGCAAAA GCGTTACGAT CGTTTGTCTG AGTTGCGCAA TCAAGCGGTT GCTGAATTGG CTACCGAAGA ATCTGGCGTA TCTGCAGATG AAGTTAAAGG CCTGTTTGCT AAAATCGAAA AGCAAATTGT TCGTTCACGT GTTGTTGCAG GCGAGCCGCG TATCGATGGC CGCGACAGTA AGACTGTACG TCCACTACAC GTAGAAGTGG GTGTTTTACC TAAGGTTCAT GGTTCTGCAC TGTTTACCCG TGGTGAAACT CAGGCTTTGG TTGTTTCTAC TTTAGGTTCG GCCCGCGATG CACAAATTAT TGATGCATTA GAAGGCGAGC GTAAAGATCC GTTTATGTTG CACTACAACT TCCCTCCTTA CTCTGTAGGT GAGTGTGGTC GTATGGGGGC TACAGGTCGT CGCGAAATTG GTCACGGCCG TTTGGCACGT CGCGGTATTG GCGCAGTTTT ACCAAAAGAA GAAGATTTCC CTTACACCAT GCGTGTAGTA AGTGAAATCA CTGAATCTAA CGGTTCTAGC TCTATGGCCT CTGTATGTGG TGCGAGCTTG GCGTTGATGG ATGCTGGTGT ACCTCTGAAA GCACCTGTTG CTGGTATTGC AATGGGCTTG GTTAAAGAAG ACAACGGCTT TGCTGTTCTT ACCGACATTT TGGGTGATGA AGATCACCTA GGCGATATGG ACTTTAAAGT TGCCGGTACT GCCGATGGTG TTACCGCTCT ACAGATGGAT ATCAAAATTG AAGGTATCAC TGAAGAGATC ATGGAAATTG CTTTAGGGCA GGCCATGGAC GCGCGTTTAC ACATTCTTGC GGAAATGAAC CGTGTTATCG CTTCTCCACG TAAAGAGTTG TCTGAGAACG CGCCGCAATT CCACACCATG AAAATCGATC CAGACAAGAT TCGTGACATC ATTGGTAAAG GCGGTGCAAC TATCCGTTCT ATTACTGAAG AGACTGGCGC ATCTATCGAT ATCGACGATA ACGGCACAAT CAAAATCTAC GCCGACGATG GTGACGGTAT GCAAGCTGCT ATCGCGCGTA TTGAAGAGAT TACTGCAGAA GCAGAGATTG GTGCTGTATA CCAAGGTAAA GTTGTACGTA TCGTTGATTT CGGTGCGTTT GTTAACTTCT TGCCTGGTAA AGATGGTTTG GTGCACATTT CACAAATCGC TCACGAGCGA GTACAAAATG TTTCTGACTA CTTGAAAGAA GGTCAAGACA TTGAAGTGAA GTGTATGGAT ATTGACCAGC GCGGTCGTAT TAAGCTATCC ATCAAAGAGT TACTGCCTGC TCCAGAAGCA GAAACTGCAG AAGCTCCAGC AGGAGAAGGC GAAGAGTAA
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Protein sequence | MQWGTPSQKD KKVNPVIKKF QYGNDTVTLE TGRIARQASG AVLASMGQTS VLVAVTGSKE AKPGQDFFPL SVHYQEKAYA AGKIPGGFFK REARPSEKET LTSRLIDRPI RPLFPNGFLN EVQVVCTVIS AEKDVDPDIV AMIGTSAALA ISGIPFNGPI GAARVGYTQE SGYLLNPTYS TLKTSELDMV VAGTADAVLM VESEAKELPE DIMLGAVLYA HQEMQAVVQA VAELAKDAAK PVWDWKPEEV NAELKAKVEH GFADSVGVAY RITDKQKRYD RLSELRNQAV AELATEESGV SADEVKGLFA KIEKQIVRSR VVAGEPRIDG RDSKTVRPLH VEVGVLPKVH GSALFTRGET QALVVSTLGS ARDAQIIDAL EGERKDPFML HYNFPPYSVG ECGRMGATGR REIGHGRLAR RGIGAVLPKE EDFPYTMRVV SEITESNGSS SMASVCGASL ALMDAGVPLK APVAGIAMGL VKEDNGFAVL TDILGDEDHL GDMDFKVAGT ADGVTALQMD IKIEGITEEI MEIALGQAMD ARLHILAEMN RVIASPRKEL SENAPQFHTM KIDPDKIRDI IGKGGATIRS ITEETGASID IDDNGTIKIY ADDGDGMQAA IARIEEITAE AEIGAVYQGK VVRIVDFGAF VNFLPGKDGL VHISQIAHER VQNVSDYLKE GQDIEVKCMD IDQRGRIKLS IKELLPAPEA ETAEAPAGEG EE
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