| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2698 |
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| Symbol | hslU |
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| ID | 3968478 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3424365 |
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| End bp | 3425681 |
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| Gene Length | 1317 bp |
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| Protein Length | 438 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637921796 |
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| Product | ATP-dependent protease ATP-binding subunit HslU |
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| Protein accession | YP_528170 |
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| Protein GI | 90022343 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1220] ATP-dependent protease HslVU (ClpYQ), ATPase subunit |
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| TIGRFAM ID | [TIGR00390] ATP-dependent protease HslVU, ATPase subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.408772 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000313907 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGTCCACTA TGACACCACG TGAAATAGTT CATGAATTGG ACCAGCATAT TGTTGGTCAG
CAGGATGCCA AAAAAGCAGT AGCCATTGCG TTGCGCAATC GCTGGAGAAG AATGCAGCTA
GATGCCAAGC TACGCACAGA AATCACCCCT AAAAATATTT TAATGATAGG CCCAACCGGG
GTGGGTAAAA CTGAAATAGC CCGCCGGTTG GCCAAACTTA CCAACGCACC ATTTATAAAA
GTAGAAGCCA CTAAATTTAC AGAGGTGGGC TATGTTGGCC GCGATGTAGA GTCAATTATT
CGCGATTTGG TGGATAGCTC TATAAAAATG ATGCGCGAAC AAGAAATGAC CAAAGTGCGG
CACCGCGCTG AAGAAGCCGC CGAAGAAAGA ATTCTTAACG CATTGCTGCC ACCGGCCAGA
GGCGAGGATG GCGCAGTAGA AGATTCCTCT ACTCGCCAAA TATTCCGCAA GAAATTGCGC
GAAGGTCAGT TAGACGATAA AGAAATTGAG ATAGATGTTT CTGCCACCCC AGTGGGCGTA
GAGATAATGG CTCCTCCTGG CATGGAAGAT ATGACCAGCC AGTTGCAAAA TATGTTCTCG
AGCATGAACA CGGGCAAAAC AAAAAAAACA AAACTTACTG TTAAAAAAGC ATTCAAAAAA
TTAACAGATG AAGAAGCGGC TAAGCTTGTT AATGAAGAAG AATTAAAAGC ACAAGCCATA
GATGCCGCCG AGCAAAATGG CATTGTGTTT ATCGACGAGA TAGACAAAGT AGCCAAGCGT
GAAGGCAATA GCGGCGCAGA TGTATCGCGC GAAGGTGTAC AGCGCGATTT GCTGCCACTT
ATTGAAGGCT GCACGGTTAG CACTAAGCAC GGCATGATCA AAACAGACCA CATTCTGTTT
ATAACCTCTG GTGCATTCCA TGTTTCCAAG CCCTCAGACC TTATCCCAGA GCTGCAAGGG
CGCCTACCTA TACGTGTTGA ATTGCAAGCG CTTACGCCAG ACGATTTTGA GCGTATTCTT
ACAGAACCAA CAGCATCGCT TACTGAACAA CACCAATCGT TACTGGCAAC AGAAGGCACA
CAAATCGAAT TTACCGCCGA CGGAATCCGT AAAATCGCCG AAATTGCTTA TCAAGTAAAC
AAAAGCACCG AAAATATTGG CGCCCGACGC TTGCACACAG TGCTAGAAAA ATTATTGGAA
GAGATTTCGT TTGCCGCCGG TGAAAGCGAT AACAACGTAA CTATCGATGC TGCATTTGTT
GATGGCCAGC TTGGCGAGCT CACCAAAAAC GAAGATTTGA GCCGATTCAT CCTTTAA
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| Protein sequence | MSTMTPREIV HELDQHIVGQ QDAKKAVAIA LRNRWRRMQL DAKLRTEITP KNILMIGPTG
VGKTEIARRL AKLTNAPFIK VEATKFTEVG YVGRDVESII RDLVDSSIKM MREQEMTKVR
HRAEEAAEER ILNALLPPAR GEDGAVEDSS TRQIFRKKLR EGQLDDKEIE IDVSATPVGV
EIMAPPGMED MTSQLQNMFS SMNTGKTKKT KLTVKKAFKK LTDEEAAKLV NEEELKAQAI
DAAEQNGIVF IDEIDKVAKR EGNSGADVSR EGVQRDLLPL IEGCTVSTKH GMIKTDHILF
ITSGAFHVSK PSDLIPELQG RLPIRVELQA LTPDDFERIL TEPTASLTEQ HQSLLATEGT
QIEFTADGIR KIAEIAYQVN KSTENIGARR LHTVLEKLLE EISFAAGESD NNVTIDAAFV
DGQLGELTKN EDLSRFIL
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