Gene Sde_2686 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2686 
Symbol 
ID3968466 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3410678 
End bp3411187 
Gene Length510 bp 
Protein Length169 aa 
Translation table11 
GC content49% 
IMG OID637921784 
Productshikimate kinase 
Protein accessionYP_528158 
Protein GI90022331 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0703] Shikimate kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.536815 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0662498 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGATTGATA ACGTTGTATT GGTCGGCCCC ATGGGGGCCG GCAAATCTAC CATCGGTAGG 
TTATTAGCTG CCCGTCTTGC ATTTCATTTC TATGACACAG ATTCGGTAAT CGAGGAGCGC
ACTGGTGCGG ACATTCCTTG GATCTTCGAC GTAGAGGGTG AGGAAGGGTT TCGTGCACGT
GAATCTGCAG TTTTGGGTGA GCTTGTGCAT TCCTCAGGTG CTGTCATCGC AACCGGCGGT
GGTATAATAA TGCGTGAAGT TAATCGTGAA ATGCTGTCTC AAGCAGGTGC TGTGGTTTAC
TTGACTGCAA GTATTGATCA GCTCGTAGAG CGCACATGTA AAGATAAAAA AAGGCCTCTT
CTCCAAGTGG CTGACCCGCG CGCAAAAATT ATTGAGCTTA TAAAATTGCG CGACCCCCTT
TATAGGGAGG TGGCAACGTG TGTGGTTGAA ACTGATGGGC GCTCCCCTCG TTTCGTTGTT
CAGCATATTG CTGAACTGCT GAATGCCTAA
 
Protein sequence
MIDNVVLVGP MGAGKSTIGR LLAARLAFHF YDTDSVIEER TGADIPWIFD VEGEEGFRAR 
ESAVLGELVH SSGAVIATGG GIIMREVNRE MLSQAGAVVY LTASIDQLVE RTCKDKKRPL
LQVADPRAKI IELIKLRDPL YREVATCVVE TDGRSPRFVV QHIAELLNA