| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2652 |
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| Symbol | |
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| ID | 3968510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3357476 |
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| End bp | 3361108 |
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| Gene Length | 3633 bp |
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| Protein Length | 1210 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637921750 |
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| Product | 3-dehydroquinate synthase |
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| Protein accession | YP_528124 |
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| Protein GI | 90022297 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.000360118 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0199769 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAACCA TCTACAACCG CTTCAAGCTA ACCGCGTTAT CCGCGGCAAT GCTCACGGCA
TACGGCACCG CCTATGCCCA AGAAGATAAC CCTGAAGCAG ATGCCAACAT AGAAGAAGTT
ATTGTTACCG GCATTCGCGC TAGTATCGAA AAATCGATAG ATGATAAGCG TTTTTCTAAA
AACATTGTCG ATACAATTAA CGCGGAAGAC ATAGGTAAAA CTGCAGATCA AAACATTGCA
GAGGCCTTAT CTCGTGTAAC CGGCGTATCG CTACAATCGC GCGATGGCGA AGGTACCACC
ATTACTGTTC GCGGTGCCAA TGCCAACCAA AATAACATCA CGCTAAACGG CGCAACGCTC
ACTAGTACAG ACTTCAGCCA AGCCGTAGAC CTAAGCGCAT ACTCAGCAGA CATTCTCTCT
AAAGTTGAAG TAGTTAAAAC TCCCAGTGCC GATCACGACG AAGGCTCTCT CGGCGCTAAC
GTAAACTTAG TTACAGCCAA ACCATTAGAG CTAAAAGACA ATGTGCGTTC GCTGACTGTT
CAAGGGCGCT ATAACGATTT TGTTGACGAC ACAAACCACA AAATTTCGGG CTCTTTCTCG
CATACATTTT TAGATGACAC CTTAGGTGTC ATTGTTACCG CCTATGACGA AACCAGCAGC
ATTCGCCGCG ATCAGTTCCG CGTGGATGAC TATGTAGCTT CCAATACAGC TCGTATTGCT
CGCGATCAAA ATGGCGAAGT TATTACTAAT GTGCGCGCAA TCGTTCCCTC TGCTATGGGT
TACGAATTGC ACCAGAATGA AAGCAACCGT CGCGGCCTAA CCGCTGGCGT GCAATGGCAG
CCAACCGATA CTACCGATGT AATGCTAAAC GTTACCCATT CGGAACAAAG TTTGGTTAAC
AGCTTTACAG GCTTAAAAAC ACGCCGCCCA AATACGCCTA ACTTTTTTGA AGGCGAAGAA
GTTATTCCTG GCTTTCCCGC TGCTGGTTTT ACCGATCCAC AGCAAGACTG GTGGACGATT
GATACCGACA CTCGCACTTT TACAAAGTAC GTAAACCGCG CAGGCCCCGG CGACTTAACC
ACCTCTGAAG GTGGCAGCGA TAACACCAAC AGTGTTGTCT CGCTAGAATT AAATCAGGAC
ATTACCGACA CACTTCGTGT AAGCGTAAAA GGCGGTTACT CCAAAAGTGA ACAAGTCACC
ATCCCCGATA ACGCTTGGCT AAACATGCAG AACTACATGC ATGTACCCGG GCAAGTGGTA
ATGGCAATTG GGCCATACGG TAGCGAAGGT GGCATTGAAC CCGTTGGTTA CGACTGTACT
AGCGGCGAAT GTACAATGGT TTTTGGCAGC GGCTTTGTAG ACTTAGGTGA AAACATTACC
GCTTATGAAG AAGTCGATGA CGACGGCATA TTACAACAGC GTCCAGGCTG GTGGGATAAT
ACCGCCACCA CCACTTTCAA CCCACAAGAT CTTCGTGCAC AAGGTATTTC ATTCCTAAGC
CGCACCGATC GCAAAGTTGA AGATAAAAAC CAATCGTTCC AAGTGGATTT CGATTGGGAT
GTAGATAAAT TTGGTTTAAC CACAGCGGAA TTCGGCGCGA AGTACGCTTC GCGATCTAAA
TTTGTGGACG ATCAATCTTA TCAATTTTCT AGCTCCGAAG TAGCCGACAT TATTCGCAAT
GATGAAGGCC ACGCAATTGC AGTACCGGGT GGATCACTGC TTGATATTAG CGGTGAAATG
ATCACGACTG GTGAAAGCTT CCCCTACGAC GACTTTATGT CTTCACTTGG TTATGGCCGC
GACAACGCCA CCATTGGCTG GACACCCGTA TCTGGCGTTA AAGCGTTAGA ATTAACGCAA
GGTGCAGCAG ACATTGTTGG TACTCGCGAC GACACGGATA CACGCAGCGC CGACTTAGAC
ACCATTGCCG CGTATATAAA AACCAGCTTT GCATTTATGG ACGATCGCTT AACCGGTGAT
ATAGGTTTGC GTTATGTAGA AACCGAAGTT GTGGCCACAG GTTACTCTGG CTTTACTTTC
GCCTCAGACC GAGGCAACAA CCTAGAGCGC GTTTTCGATC ACGTTAAACT AGCTGAGCTG
CGCGACACCT CTTTGCCTGC TTGCCCTGAA CCAGGCATGT ACTTCGAAGA TGAAAACGCA
CCGCTGGCAA TTGAACGCCA CCTAGAGCGC ATAGATGGTT TAGGTTACGA CGTAAATAGT
GGCTCCCCCG ATACTTGGAC TCCAATCCCA GATGCGGGCG CTTGTCATGA ACCACTGCTA
GCGGCACGTG CAGAATTTAT TACCTCTGGC GCAACCGGCG AAGCTCCGTT TGTAAACTGG
GAAACCATGC AACGCCACGC CGATATTTCG CAATCACACA TCTACGCGTG GGGCGCAAAC
TGGGGTAAAG AGTTTGACGA GAACGGTGCT TTGGTTAACA CCAATCAAGA AGACCGCTCT
ATTGTGGCAA TTCCCACTAC AAACTCGCAC AAGTACTCCA CAATTTTGCC GAGCTTGAAC
CTAAACTACA TTATTAAAGA TGATTTGATC GGTCGCTTTG CCATATCCAA AACAATGGCT
CGCCCACCTA TCGATCAACT CCGCCCAGGT TTCAGCGGTA CCGAAGATCC ATGGCCAGGC
CGTACCAATA ACCAAGTGGA TATGTACAAC ACCAAGCTAG ACCCGCTTGA ATCTAAAAAT
ATCGACTTTT CTTTAGAGTG GTATTTTGAC GAGTCTGCCA TGGTTGCCGG TACAGTGTTC
CACAAAGACA TGACTAACTT TGCCACCGTT GAATCTCTGC GTACCTATTT AGACGATTTG
CGTAACTTAG ACACATCTGT GCCTTACGAT TCAAGCCAAC TAGCCGTTAT TGCAACCGAT
AACGCCGCGG ATGACTACGG TTTAGCAAGT TGTTTTCCTA AACGCAGTAT CGCGGATTTC
CCATTCGATA CGCGCGATGA AAACTGGAGC GACGACCTAC GCGACCTTTG CGCACAATTT
AACGTGAACA AAACCGTGAA TGGCTCGGGC GCAACGGTTA CCGGTATTGA ATTGCAATAC
ACACAAAGCT ACGACTTTTT ACCAAGCTAC TGGGCAGGTT TAGGTACGTC TGTTAACTAC
ACCTACCAGC AAAGTGAATA CGACAAAGAG CAATCGTCCA TTGATAGCAA CATTACCTTA
CCAAGCTACC CAGTAGCCGA TACGCCAGAG CACACTTATA ACGCGACCGT TTTTTGGGAG
CATGAAGACG TGCAATTGCG TTTAGCATAC CGCGGTAACT CTGACAGCTT AGTAGGAACA
GATAGCAACA ATGGCCGCAG CGGTCGTACC TGGAACCAAG GCTCACTTTG GAATGAAGGT
CGCGCAACAT TAGATTTCTC TGCATCTTGG CAAGTAACAG ATGCTGTGGA TCTAACCTTC
CAAGCTATCA ACCTAACCGA TGCAGAAAAT AGAACCTATT TCACTAGTCG CACCTTGGCA
ATCGACCCCA TTCGCGATGA GAACGGCACT ATTACCGGCT GGGAAGAATA CGACGAAGGC
ACACCAATGG ATAACGACGC AACAACATCT CGCACTGTTG CTCGCTACAA AAACGGTAGA
ACTTTCCGTT TAGGTGTACG CGTAAACTTC TAA
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| Protein sequence | MSTIYNRFKL TALSAAMLTA YGTAYAQEDN PEADANIEEV IVTGIRASIE KSIDDKRFSK
NIVDTINAED IGKTADQNIA EALSRVTGVS LQSRDGEGTT ITVRGANANQ NNITLNGATL
TSTDFSQAVD LSAYSADILS KVEVVKTPSA DHDEGSLGAN VNLVTAKPLE LKDNVRSLTV
QGRYNDFVDD TNHKISGSFS HTFLDDTLGV IVTAYDETSS IRRDQFRVDD YVASNTARIA
RDQNGEVITN VRAIVPSAMG YELHQNESNR RGLTAGVQWQ PTDTTDVMLN VTHSEQSLVN
SFTGLKTRRP NTPNFFEGEE VIPGFPAAGF TDPQQDWWTI DTDTRTFTKY VNRAGPGDLT
TSEGGSDNTN SVVSLELNQD ITDTLRVSVK GGYSKSEQVT IPDNAWLNMQ NYMHVPGQVV
MAIGPYGSEG GIEPVGYDCT SGECTMVFGS GFVDLGENIT AYEEVDDDGI LQQRPGWWDN
TATTTFNPQD LRAQGISFLS RTDRKVEDKN QSFQVDFDWD VDKFGLTTAE FGAKYASRSK
FVDDQSYQFS SSEVADIIRN DEGHAIAVPG GSLLDISGEM ITTGESFPYD DFMSSLGYGR
DNATIGWTPV SGVKALELTQ GAADIVGTRD DTDTRSADLD TIAAYIKTSF AFMDDRLTGD
IGLRYVETEV VATGYSGFTF ASDRGNNLER VFDHVKLAEL RDTSLPACPE PGMYFEDENA
PLAIERHLER IDGLGYDVNS GSPDTWTPIP DAGACHEPLL AARAEFITSG ATGEAPFVNW
ETMQRHADIS QSHIYAWGAN WGKEFDENGA LVNTNQEDRS IVAIPTTNSH KYSTILPSLN
LNYIIKDDLI GRFAISKTMA RPPIDQLRPG FSGTEDPWPG RTNNQVDMYN TKLDPLESKN
IDFSLEWYFD ESAMVAGTVF HKDMTNFATV ESLRTYLDDL RNLDTSVPYD SSQLAVIATD
NAADDYGLAS CFPKRSIADF PFDTRDENWS DDLRDLCAQF NVNKTVNGSG ATVTGIELQY
TQSYDFLPSY WAGLGTSVNY TYQQSEYDKE QSSIDSNITL PSYPVADTPE HTYNATVFWE
HEDVQLRLAY RGNSDSLVGT DSNNGRSGRT WNQGSLWNEG RATLDFSASW QVTDAVDLTF
QAINLTDAEN RTYFTSRTLA IDPIRDENGT ITGWEEYDEG TPMDNDATTS RTVARYKNGR
TFRLGVRVNF
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