| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2634 |
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| Symbol | |
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| ID | 3968531 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 3332885 |
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| End bp | 3334297 |
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| Gene Length | 1413 bp |
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| Protein Length | 470 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637921732 |
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| Product | host factor Hfq |
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| Protein accession | YP_528106 |
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| Protein GI | 90022279 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00879] MFS transporter, sugar porter (SP) family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0000323251 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.44262 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGATT CAGCACTTCC CTCGGGGGAA AATAAATCGT TTGTAATTCT CATTAGTTGT
ATTGCAACTA TTGGTGGGTT CCTGTTCGGC TTCGACAGCG GCGTAATTAA TGGCACCGTT
GATGGCCTAG TCACGTCATT TGGCGTAACA AAAACGGCAG TGGGTGTGCA CGTTGCCTTT
ATGTTACTAG GTTGTGCCGT AGGTGCCGCA GCAGCCGGTC GCCTTGCCGA TTTATACGGC
CGCAGGGCAA TGCTTATTGT TGCAGCCATA TTATTTATTG TTTCTGCTTG GGGCTCGGGC
GTAGCAACAG GCATTGTGGA ATTTGATATT TATCGTCTAC TTGGCGGTTT AGCCGTGGGC
GCAGCCAGTG TTATGGCTCC AGCCTATATT AGTGAGGTAG CGCCAGCGCG ATATCGCGGC
AGGCTCACCA CTATTCAGCA GGTTGCCATT ATTAGTGGTT TAACCGCTGC ATTTTTAAGT
AACTATGTGC TTGCGCATAC TGCAGGTTCT TCTTTAGAGC CTTTTTGGAT GGGCATTGCC
ACGTGGCGCT GGATGTTTTG GATAGAAATT GCGCCGGCTG CTATCTTCTT TTTTGCACTT
ATGGTTATTC CAGAAAGCCC GCGCTTTCTT GTTGCCAGCG GCAAAAAAGA CAAAGCACTT
ACTGTGTTAA CTAAATTGTA CGGCGCGCAA GCAGCCCCAG GTAAAGTTGC AGAAATTGAC
TCATCGTTAG ATCACGACCA CAAACCTCGC CTTTCCGATT TAATTAGTAA AGTTACTGGC
AAGGTGCGCC CCATTGTTTG GGTGGGTATT GGTCTTGCTA CCTTCCAGCA GCTTGTGGGC
ATTAACGTAA TTTTTTATTA CGGCTCTATT CTTTGGCAAT CGGTGGGTTT CTCAGAAGAT
CACGCTCTGT TAATTAACGT TGTATCTGGT GCGGTAAGTA TTGGCGCTGT GGTGTTATCA
CTTGTATTAG TAGATAAAAT TGGCCGCAAG CCCCTATTGT GGATTGGCTC TGCGGGTATG
GCTGTTACCC TTACCTTAAC CGCAATTGCA TTTGCCACGG GCACACTCGA TGCGAATGGC
GACCTACAAC TAAGTGACAA TATGGGCATT CTCGCCCTTG TGGCAGCCAA CGTGTATGTT
ATTTTCTTTA ACATGAGTTG GGGCCCTGTT ATGTGGGTTA TGTTGGGCGA AATGTTCCCC
AACCAAATTC GCGGGTCTGG CTTGGCGGTT GCAGGTTTAT TCCAATGGGG GTCTAACTGG
GCCATCACCA TGAGCTTCCC GGCCCTACTG GCTGGCTTGG GCTTAGCGGT TACCTACGGG
TTCTACGCCT TGTGTGCCTT TATTTCTATC ATCTTTGTTA TTAAGTATGT AAACGAAACA
AATGGTGTAG AGCTGGAAGA TATGGAAGGC TAA
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| Protein sequence | MTDSALPSGE NKSFVILISC IATIGGFLFG FDSGVINGTV DGLVTSFGVT KTAVGVHVAF
MLLGCAVGAA AAGRLADLYG RRAMLIVAAI LFIVSAWGSG VATGIVEFDI YRLLGGLAVG
AASVMAPAYI SEVAPARYRG RLTTIQQVAI ISGLTAAFLS NYVLAHTAGS SLEPFWMGIA
TWRWMFWIEI APAAIFFFAL MVIPESPRFL VASGKKDKAL TVLTKLYGAQ AAPGKVAEID
SSLDHDHKPR LSDLISKVTG KVRPIVWVGI GLATFQQLVG INVIFYYGSI LWQSVGFSED
HALLINVVSG AVSIGAVVLS LVLVDKIGRK PLLWIGSAGM AVTLTLTAIA FATGTLDANG
DLQLSDNMGI LALVAANVYV IFFNMSWGPV MWVMLGEMFP NQIRGSGLAV AGLFQWGSNW
AITMSFPALL AGLGLAVTYG FYALCAFISI IFVIKYVNET NGVELEDMEG
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