Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2607 |
Symbol | |
ID | 3968600 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 3305833 |
End bp | 3306981 |
Gene Length | 1149 bp |
Protein Length | 382 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637921705 |
Product | succinyl-diaminopimelate desuccinylase |
Protein accession | YP_528079 |
Protein GI | 90022252 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACAAACG AATCCGCACA CAACACCCCA ACCGTAAAAT TAGCCTGCGA CCTCATTGCA CAGCCTTCTG TTACCCCAGA AGATGCTCAC TGCCAACGCA TGATGATTGA GCGCTTAGAA GCCATTGGTT TTAAAGTAGA AAACCTGCGG TTTGGTGACG TAGATAACTT TTGGGCGATT CGCGGCGAAA GTGGGCCGAT ACTCGCCTTT GCTGGCCACA CAGATGTAGT GCCTACAGGC GACTTGGGCA AATGGGCCAC AGACCCATTC ACCCCAACCA TTAAAGACGG CATGCTCTAC GGGCGCGGCG CCGCCGACAT GAAAGGCAGC CTGGCCGCCA TGATTACCGC ATGCGAAAGT TTTATTGCGG CCCACCCGAA CCACACAGGG CGCATTGCGT TTTTAATTAC CAGTGATGAA GAAGGCCCAG CCATTAACGG CACCGTTAAA GTGGTTGAGT GGCTAGAAGC GCGCAACGAA AAAATAAAAT GGTGTTTGGT TGGCGAGCCA TCAAGCACTA CCTTAGTGGG CGACGTAATC AAAAATGGTC GCCGCGGTTC ACTAGGTGCC GAACTTATCG TTAAAGGCGT GCAGGGCCAT GTGGCGTACC CTCACCTTGC GGTAAACCCC ATTCACATGA TTGCACCGGC ACTTGCAGAA ATGGCGAGTG AAACCTGGGA TAACGGCAAC GAATTTTTTC CGCCTACCAG CTTTCAGGTT TCTAATTTTA ACAGCGGTAC CGGCGCAACC AATGTGGTAC CGGGCGAAGC CAATGTGGTG TTTAATTTCC GCTTCTCTAC CGAGCTAACC GCAGACATTT TAAAACAGCG CACCCACGCC ATATTAGATA AGCACAACGT AAACTACGAT TTAAAATGGA ATTTATCTGG CGAGCCGTTT TTAACGGCCG AAGGCGAGCT TGTTGCTGCA TCCGTTGCCG CCATTAAAAA AATTACCGGC CGCGACACAG AGCTGTCTAC CGCTGGCGGC ACATCCGACG GGCGCTTTAT TGCCCCTACC GGCGCACAGG TATTAGAGCT AGGCCCAGTT AACGCCACTA TTCATCAAAT AAACGAATGT GTAAGCGTAG ATGACCTAAA TACCTTAAGC GACATCTACT GCACTATGCT TACAGAGTTA CTCGCTTAA
|
Protein sequence | MTNESAHNTP TVKLACDLIA QPSVTPEDAH CQRMMIERLE AIGFKVENLR FGDVDNFWAI RGESGPILAF AGHTDVVPTG DLGKWATDPF TPTIKDGMLY GRGAADMKGS LAAMITACES FIAAHPNHTG RIAFLITSDE EGPAINGTVK VVEWLEARNE KIKWCLVGEP SSTTLVGDVI KNGRRGSLGA ELIVKGVQGH VAYPHLAVNP IHMIAPALAE MASETWDNGN EFFPPTSFQV SNFNSGTGAT NVVPGEANVV FNFRFSTELT ADILKQRTHA ILDKHNVNYD LKWNLSGEPF LTAEGELVAA SVAAIKKITG RDTELSTAGG TSDGRFIAPT GAQVLELGPV NATIHQINEC VSVDDLNTLS DIYCTMLTEL LA
|
| |