| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2565 |
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| Symbol | lspA |
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| ID | 3968674 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 3254190 |
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| End bp | 3254642 |
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| Gene Length | 453 bp |
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| Protein Length | 150 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637921663 |
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| Product | lipoprotein signal peptidase |
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| Protein accession | YP_528037 |
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| Protein GI | 90022210 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0597] Lipoprotein signal peptidase |
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| TIGRFAM ID | [TIGR00077] lipoprotein signal peptidase |
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Plasmid Coverage information |
| Num covering plasmid clones | 44 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.958403 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGATTGTGT TAGATCAAAT CACTAAGCAA ATAGCTGAAG CACAACTGTT GTATAACCAA
CCGGTAGAAA TTACTGGCTT CTTTAACTTT ACCTTGCGCT ACAACCCCGG TGCGGCATTT
AGTATGTTTG CCGATTGGGG CGGTGCGCAG CGCTGGGGCT TGGGTGCGTT GGCGGCAGGG
GTGAGTGTTG CTATTACTAT TTGGATTGCC AAGCTAGATA AAAGCCGGTG GACAGAAGCT
TTGGCTTTGG CGCTGGTGCT GGGCGGTGCA ATAGGCAACC TTTACGACCG CATGCTGCTT
GGTCACGTAA TTGACTTTAT TGAAGTGCAC GGCTGGGGAT ACTACTTTCC CGCATTTAAT
ATTGCCGATT CTGCAATTAC TGTAGGCGCA GGCATACTTA TTTACGATGC GCTATTTATT
CAACCTAAAT TAAAAAAGAC AGCCGACGCT TAA
|
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| Protein sequence | MIVLDQITKQ IAEAQLLYNQ PVEITGFFNF TLRYNPGAAF SMFADWGGAQ RWGLGALAAG
VSVAITIWIA KLDKSRWTEA LALALVLGGA IGNLYDRMLL GHVIDFIEVH GWGYYFPAFN
IADSAITVGA GILIYDALFI QPKLKKTADA
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