Gene Sde_2534 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2534 
Symbol 
ID3968729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3205923 
End bp3206546 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content46% 
IMG OID637921627 
ProductHolliday junction DNA helicase subunit RuvA 
Protein accessionYP_528006 
Protein GI90022179 
COG category[L] Replication, recombination and repair 
COG ID[COG0632] Holliday junction resolvasome, DNA-binding subunit 
TIGRFAM ID[TIGR00084] Holliday junction DNA helicase, RuvA subunit 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value0.416621 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.292409 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATAGGTC GATTAACAGG AATCTTGGCG GAAAAAAAAG CGCCGCATTT ACTTATAGAT 
ATTGGCGGTG TTGGGTATGA CGTGATTGCG CCTATGACGA CATTTTATCG CCTCCCCGCA
CTGGGCGAAA AAGCCGTATT ACACACTCAT TTTTCAGTTA GCGAAACATC GCAGCAATTG
TTTGGCTTTA GTAGCCAGCA AGACAGAGAG CTGTTCCGTA TGTTGATTAA GGTGAATGGG
GTAGGCCCTA AGCTTGCAGT GGGCATTATG TCCATGGAGT CATCTGATTT TGCTAAATGT
GTACTCGATG GCAACTTAAC CGCACTTGTA AAGCTACCTG GCGTAGGCAA AAAAACTGCA
GAGCGCTTGT TGGTCGATAT GCGCGATCGA GTTAAGGCCT TAGATACCAC ACCTAGCGAG
CATTCGCCTA CAGGGGAGGG GGCAGGTATT GTCCGTGTCG ATCCTGTAAT AAACACCAAT
GTAATTATAG CGGACGCTGA AAGCGCGTTA ATTGGCCTAG GGTACAAGCC TACTGAAGCT
GCCAAAGCGG TATCTGCTGC GTATAACGAT ACTATTACCA CAAGCGAAGA CCTTATCCGT
GCAGCTTTAA AAGGTATGAT TTAA
 
Protein sequence
MIGRLTGILA EKKAPHLLID IGGVGYDVIA PMTTFYRLPA LGEKAVLHTH FSVSETSQQL 
FGFSSQQDRE LFRMLIKVNG VGPKLAVGIM SMESSDFAKC VLDGNLTALV KLPGVGKKTA
ERLLVDMRDR VKALDTTPSE HSPTGEGAGI VRVDPVINTN VIIADAESAL IGLGYKPTEA
AKAVSAAYND TITTSEDLIR AALKGMI