Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2532 |
Symbol | |
ID | 3968759 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3203887 |
End bp | 3204582 |
Gene Length | 696 bp |
Protein Length | 231 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637921625 |
Product | peptidase A8, signal peptidase II |
Protein accession | YP_528004 |
Protein GI | 90022177 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0811] Biopolymer transport proteins |
TIGRFAM ID | [TIGR02796] TolQ protein |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.00489789 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
| |
Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.411252 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACTGAAA ACTCACTGTC TATCTGGAGC TTAATTGTTC AGGCGAGCGT GCTTGTACAA ATAGTGATGG CGATTCTATT TTTGCTATCG GTAGTTTCTT GGGGGTTGAT TGTTCAACGC GGTTTATACC AATACCACGC TAAGGTAGCT TACAAAGACT TCGAGCGGCA GTTTTGGTCC GGTGTGGATT TAACCCAGCT GTATAGGCAG GGCAATAGCA AGGCCAACCG AAGTGCAACC GATGGTGTAG AGAATATATT CCGCGCTGGT TTCAAAGAGT TTACTCGTTT GCGGCAGCAG GGCAGCACAG ACCCCGATGC AATTATGGAA GGCACACAAC GCACAATGCG CGTAGCTATG GCTCGAGAGG AAGAAAAACT AGAAGTGTTT TTGCCTTTTT TAGCCAGCGT AGCGTCAGTG AGCCCTTATA TTGGTCTGTT TGGTACGGTT TGGGGCATTA TGAACTCGTT TCGCGGCTTG GCTACAGAGT CTCAAGCTAC GTTGGCGTTG GTTGCTCCTG GTATTTCCGA AGCGCTTGTG GCGACGGCAA TGGGCTTATT CGCAGCAATT CCTGCGGTAC TGGCTTACAA CCGTTTTTCG TCGAATGCTG AATCGCTTAT TAGTCGTTAC GAAACTTTTG CCGAAGAGTT CTCTGCTATT TTGCACCGCC AAGTTCACTC TAAAAGCGCC GAGTAA
|
Protein sequence | MTENSLSIWS LIVQASVLVQ IVMAILFLLS VVSWGLIVQR GLYQYHAKVA YKDFERQFWS GVDLTQLYRQ GNSKANRSAT DGVENIFRAG FKEFTRLRQQ GSTDPDAIME GTQRTMRVAM AREEEKLEVF LPFLASVASV SPYIGLFGTV WGIMNSFRGL ATESQATLAL VAPGISEALV ATAMGLFAAI PAVLAYNRFS SNAESLISRY ETFAEEFSAI LHRQVHSKSA E
|
| |