| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2504 |
|---|
| Symbol | |
|---|
| ID | 3968786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 3173716 |
|---|
| End bp | 3175047 |
|---|
| Gene Length | 1332 bp |
|---|
| Protein Length | 443 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637921595 |
|---|
| Product | xylose isomerase |
|---|
| Protein accession | YP_527976 |
|---|
| Protein GI | 90022149 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2115] Xylose isomerase |
|---|
| TIGRFAM ID | [TIGR02630] xylose isomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.149653 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTAG TACTTGGCGA TAAAGAATAC TTCCCCGGTG TGGGCAAAAT TGAATTTGAA
GGCCCAGATT CCGACAACCC ATTTGCATTT AAATATTACG ATGAGAACCG TGTAGTTGCC
GGCAAAACAT TAAAAGAGCA CTTTAAGTTC TCTGTATGTT ACTGGCACAC GTTCTGCGGC
ACAGGTGCTG ATCCATTTGG CCCTGGCCCA TTGCAATTCC CGTGGAACAA GGCCGACACC
GCAGACGCGC GCGCGCGTTT AAAAATGGAT GCGGCATTTG AATTTATCAC CAAGTTGGGC
GCGCCTTATT ACTGTTTCCA CGATATCGAT TTAGTTGAAG AGGGCGCGAG TCGCCAAGAA
ACTCAACGCC GTGTACAAAC GATTGTTGAA TACGCAAAAG AGAAGCAAGC GGCTTCTGGC
GTTAAGTTGC TTTGGGGCAC CGCTAACTTA TTTTCCAACC CACGTTATAT GAATGGTGCA
TCTACAAACC CAGATTTTAA CGTTGTTGCT TATGCTGGCG CGCAGTTAAA AGATGCACTT
GATGCAACCA TTGCGCTAGA TGGTGAGAAC TATGTTTTTT GGGGTGGCCG TGAAGGCTAC
ATGAGCCTTT TAAATACCGA TATGGGCAGA GAGCAAGAGC ATTTGGCTCG CTTTTTAACT
ATGGCCAGAG ATTACGCTCG TGGCCAAGGT TTTACCGGTA ATTTCTTTAT CGAGCCTAAA
CCAATGGAGC CTTCCAAGCA TCAGTACGAT TTTGACAGTG AAACCGTAAT TGGTTTCTTG
CGTCATCACG GTTTGGATAA AGACTTTAAA TTAAATATAG AAACAAACCA CGCCACACTT
GCTAACCATA CTATGGATCA CGAAATGACC GTAGCGGCTA ATGCGGGCAT GCTAGGTAGC
ATTGATGCAA ACCGCGGTGA TTATCAAAAT GCTTGGGATA CCGACCAGTT CCCTTACAAC
ATTAACGAAA CCGTTGAAAT GATGATGGTA GTGCTGCGTG CAGGAGGGTT CCAAGGTGGT
GGAGTAAACT TTGATGCTAA GCGCCGTCGT AATTCTACCG ACCTAGAGGA TACCTTCCAC
GGCCATATAG GCGGTATGGA TACTTTCGCG CGCGCACTAA TTATTGCAGA CAGAATTATT
AGTGAAAGCA AAATCGAAAG TATGCGCAAA GAACGTTATG CTTCTTTTGA TAGCGGCGCT
GGTAAACAAT TTGAAACGGG CGCTCTAGAT TTAGCTGCCC TAGCCGAAAT AGGTAACGCG
ATTGGTGAGC CTGCATTAAC CAGTGGTAAG CAGGAGTACT ACGAGAACAT TATTAACCAA
TATATTCGTT AA
|
|---|
| Protein sequence | MSVVLGDKEY FPGVGKIEFE GPDSDNPFAF KYYDENRVVA GKTLKEHFKF SVCYWHTFCG
TGADPFGPGP LQFPWNKADT ADARARLKMD AAFEFITKLG APYYCFHDID LVEEGASRQE
TQRRVQTIVE YAKEKQAASG VKLLWGTANL FSNPRYMNGA STNPDFNVVA YAGAQLKDAL
DATIALDGEN YVFWGGREGY MSLLNTDMGR EQEHLARFLT MARDYARGQG FTGNFFIEPK
PMEPSKHQYD FDSETVIGFL RHHGLDKDFK LNIETNHATL ANHTMDHEMT VAANAGMLGS
IDANRGDYQN AWDTDQFPYN INETVEMMMV VLRAGGFQGG GVNFDAKRRR NSTDLEDTFH
GHIGGMDTFA RALIIADRII SESKIESMRK ERYASFDSGA GKQFETGALD LAALAEIGNA
IGEPALTSGK QEYYENIINQ YIR
|
|---|
| |