Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2500 |
Symbol | |
ID | 3968782 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 3162714 |
End bp | 3165635 |
Gene Length | 2922 bp |
Protein Length | 973 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 637921591 |
Product | Holliday junction DNA helicase RuvB |
Protein accession | YP_527972 |
Protein GI | 90022145 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1501] Alpha-glucosidases, family 31 of glycosyl hydrolases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.297419 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAATTATT ATTTAAACAA AAAGCGACTG GGGCAATTGC TCACCGGCGC GGCCATTATT CCCGTGCTAT ATGCATGTGG CTCACAGGAA AAAAACGTAG AGCCTGCAAC GGTTAATTGG CATAAAACAA GCGACGGCGT CGTTGTAAGC TTGCAAGATA GCGAAGCAAA AAAAGTGCGC TTGCAAGTCA TTAACGATCG GATAGTACGT GTTACCGCTA CGCCACAGCA GGATTTCAAC AACCTGCCAA ATACGCTTAT GGTGGTGGCC AAGCCCGAGC AAACGGCGTT TGAAGTTAAA CAAAACGATG CATCTGTTGT GTTATCAACG GCAGATCTAT CTGCCGAAGT GTCATTAGTA ACTGGTGTTG TAAGTTTTAA AGATGAGCAC GGCAAGGTGC TTACAACAGA AGTTGATCGC GGCAATTTTG GGGCGGTAAC CCGCGACCCA GGTGTGGTGG ACGCCGATTC ATTTGCTATT CGCCAACAGT TTACAAGCGA CGAAAATGAA GGCTACTACG GTTTAGGTCA GCAGCAGGAT GGCGAAGTAA ACTACGCTGG CGATAACGTA GAGTTAACAA CTTACAACTT AGAAATTTCT ATACCTTATG TTGTATCAAG CAAAGATTAC GCGCTGCTAT GGAACAATAC CTCAATTTCT CGTTTGGGCG ACCCCAATCC ACCCGAGCCA CTAAAAGAGG GCTTTAAACT CTTTGACGCT AATGGTAACC CCGGCGGGCT AACCGCACGT TATTTTGATG GCGATAAATT ACTGCTCGAG CGTGTAGAGG CCGATTTAGA TTATCAATTT TTAGCGCAAG GTAGTAATCG CACTACGCCC ATGCCTGATG AAACCGCTGA TGCAAAAAAT CTGCGTATTG AATGGGAAGG TAGTATCGAA TCCGATACCA ACGGTGTGCA CGAGTTAAAA ATGTATTCCA GTGGCTACGC TAAATTGTAT TTGAATGGCG AGTTAGTGTT AGATCGCTGG CGTATGAACT GGAACCCTTG GTATCACAAC ACCAAGTTAG AAATGCAGGC CGGTAAAAAA GTTGCATTAA AGTTAGATTG GCAAGTAGAT GGTGGTTATA TGCGCATAAA ACAGCATAAA CCACTGCCGG TAGCAGAGCA GGGACGTTTG TCTATTGCTT CCGATACCGC GAAAGCCATT GATTACTACT TTGTAGTTGG CGATAACAAG GATGAGTTGG TGTCTGGCTA CCGTACGCTC ACAGGTAAAG CAGTGATGCT ACCTAAGTGG GTGTTTGGTT TTTGGCAAAG CCGCGAGCGC TATAAAACAC AAGATGAAAT TATCGACGCC TTGCAAGAAT ACCGCGATCG TAAAATTCCT ATCGATAACA TTGTATTAGA TTGGAGTTAT TGGCCTCAGG ATGCATGGGG TAGTCATGAT TTCGACGAGC AATTTTTCCC CGACCCATCT GCACTAGTAG ATAAAGTACA CGAGCTAAAC GGCAATATTA TGATTTCCGT ATGGCCTAAG TTTTACCCTA CAACCGACAA CTACAAAGCG CTAAACGCTA AAGGTTGTAT GTTTAATAAA AACATCGAGC AGAAAAACCT CGATTGGATT GGCGAGGGTT ACCTAAATGG CTTTTACGAT GCCTATAACC CAGAGTGCCG TGAAATGTTT TGGGCGCAAA TTCGCGATAA GATCAATGTG CACGGTTTCG ATGCTTGGTG GTTAGATGCG GTAGAGCCAG ATATCCATTC CAACCTTTCT TTTGAGCACC GCAAAGATTT AATGACACCC AATGCACTCG GCACCGGTGC CGAAGTGTTT AACGCTTACG CTTTGCCGCA CGCAGAAACT GTTTACCAAG GCGAGCGTAG AGATGACGGT GACAAGCGCG CATTTATTCT AACGCGTTCT GGGTTTGCCG GTATTCAGCG CACCGGTTCG GCTATTTGGA GTGGCGATGT GGTATCGCGC TGGTCCGACT TAAAAGAACA AATTGCAGCA GGTGTGGGCG TGGGCATTTC TGGTATGCCG TATTGGACGT TCGATATCGG TGGCTTTACT CCAGAAGATC GCTACCGTTA TAGCGCCAAA GGTTCTGTTG GTCATTTCTC TATGATGAAC GAATCGGAAG TGCCTGAATG GCAAGAAATC AATCTGCGTT GGTTCCAATT TGGTACCTTT GTGCCGCTGT TTAGGTCCCA CGGCCAAAAC CCATATCGCG AAATATATAA CATCGCCGAT AAAGGCACCG AGGTATACGA CAGCATGGTG TGGTACACCA AAACTCGCTA TCGCTTAATG CCTTATATTT ATTCGTTAGT TGGCGATGCT CACCACAAAG ACGGCACCTT TATGCGCGCT CTGGTGATGG ATTTCCCTAG CGACCTTAAT GTGCGCGATA TTAACGACCA GTATATGTTT GGCCCCGCGC TACTCGTAAA CCCTGTGTCG GAATTTAAAG CGCGTTCACG GGATGTGTAT CTACCTGCGG GCGCAGATTG GTACGATTTC TATACAGGTG TGAAGCACAC AGGTGGTAAA ACCATTAAGG CCGATGCACC GCTTGCCAAA ATGCCTATTT TTGTTAAGGC CGGCTCTATT ATTCCAACAG GTGTAGAAAT CCAGCATGTG TACGATAAGC CCGATGCTCC TTACACCCTT AACGTGTATA CCGGTGCGAA TGGCAGCTTC GAAATTTATG AAGATGACGG CAAAACCTAC GCTTACGAGC AAGGGGCTTG GGCGCGCATT CCCGTTTCGT ACAACGATAA AACCGGTGAG CTAACCATTG GCGATCGCGT AGGTAGCTTT GAGGGAATGA CCAAAGAGCG CGAATTCCGC GTGCGCTGGA TATCTGCCAA GCGAGACGAT GCCGCCAATT TCGATACAGG TGTGGCCAAA GCCGTTACCT ATACGGGTAA GGCAATAACC ATTAAGCGCT AA
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Protein sequence | MNYYLNKKRL GQLLTGAAII PVLYACGSQE KNVEPATVNW HKTSDGVVVS LQDSEAKKVR LQVINDRIVR VTATPQQDFN NLPNTLMVVA KPEQTAFEVK QNDASVVLST ADLSAEVSLV TGVVSFKDEH GKVLTTEVDR GNFGAVTRDP GVVDADSFAI RQQFTSDENE GYYGLGQQQD GEVNYAGDNV ELTTYNLEIS IPYVVSSKDY ALLWNNTSIS RLGDPNPPEP LKEGFKLFDA NGNPGGLTAR YFDGDKLLLE RVEADLDYQF LAQGSNRTTP MPDETADAKN LRIEWEGSIE SDTNGVHELK MYSSGYAKLY LNGELVLDRW RMNWNPWYHN TKLEMQAGKK VALKLDWQVD GGYMRIKQHK PLPVAEQGRL SIASDTAKAI DYYFVVGDNK DELVSGYRTL TGKAVMLPKW VFGFWQSRER YKTQDEIIDA LQEYRDRKIP IDNIVLDWSY WPQDAWGSHD FDEQFFPDPS ALVDKVHELN GNIMISVWPK FYPTTDNYKA LNAKGCMFNK NIEQKNLDWI GEGYLNGFYD AYNPECREMF WAQIRDKINV HGFDAWWLDA VEPDIHSNLS FEHRKDLMTP NALGTGAEVF NAYALPHAET VYQGERRDDG DKRAFILTRS GFAGIQRTGS AIWSGDVVSR WSDLKEQIAA GVGVGISGMP YWTFDIGGFT PEDRYRYSAK GSVGHFSMMN ESEVPEWQEI NLRWFQFGTF VPLFRSHGQN PYREIYNIAD KGTEVYDSMV WYTKTRYRLM PYIYSLVGDA HHKDGTFMRA LVMDFPSDLN VRDINDQYMF GPALLVNPVS EFKARSRDVY LPAGADWYDF YTGVKHTGGK TIKADAPLAK MPIFVKAGSI IPTGVEIQHV YDKPDAPYTL NVYTGANGSF EIYEDDGKTY AYEQGAWARI PVSYNDKTGE LTIGDRVGSF EGMTKEREFR VRWISAKRDD AANFDTGVAK AVTYTGKAIT IKR
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