Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_2458 |
Symbol | |
ID | 3965405 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 3108235 |
End bp | 3111144 |
Gene Length | 2910 bp |
Protein Length | 969 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637921549 |
Product | ribonucleotide-diphosphate reductase subunit alpha |
Protein accession | YP_527930 |
Protein GI | 90022103 |
COG category | [F] Nucleotide transport and metabolism |
COG ID | [COG0209] Ribonucleotide reductase, alpha subunit [COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase |
TIGRFAM ID | [TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0127946 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAACAA CTGAAACGGA AAACACAGGT AAACCTCAGG GCTCCCCTAT AGCAGACAAT GCTTCTTCCT CTTCTACCAT CAACGCTACA GCACCAGGCC AACTGCGCGT TATTAAACGT AACGGCACCG TTGTACCCTA TACAGACGAC AAGATCTCTG TAGCTATGAC CAAAGCCTTT TTGGCGGTTG AAGGTGGCAC CGCTGCTGCT TCACGTCGTA TTCACGAAAC AGTAGAAGGG TTGACCGCTC AGATTTCCGC GACGTTCAAG CGCCGCATGC CCTCGGGTGG CACCATCCAC ATTGAAGAAA TTCAAGACCA AGTTGAACTT ACATTAATGC GTGCGGGCGA ACACAAAGTT GCGCGTGACT ACGTTATTTA CCGTGCTAAA CGTGCCGAGC AACGTACCCC TGCCGTTAAC GTAGAAGATG TAAACTTTAG CGATTTCCCC GAAATTAATG TTGTAGACCA CAACGGCGAT CGTCACCCTC TCGATATCGA CCGTATTAAA ACCGTTGTTG CAGAAGCGTG TGCAGGCCTT AAAGATGTGG ATGCAGACGC TATATTAAAA GAAGCCATGC GCAGCCTGTA CGACGGCGTA TCGCTTACTG ATCTGAACAC CGCGTTGGTT ATTTCTGCGC GTACTCTTGT TGAAAAAGAG CCTAACTACA CTTACGCAAC ATCGCGCCTA TTAATGGACA AGTTGCGTGC TGAGGCACTT AGCTTTTTGG GTATAGCTGA AGAAGCAACT CAAGCCGAAA TGGAAACCCT GTACGCTAAA ACGCTACCAG CTTACATTGA AAAAGGTATA GAGCTAGACC TCATCTCACC TGATCTAGCC TCTTACGACC TTAACATGCT TGGCAATGCA CTTATCGCTG AGCGCGACTT GCAGTTCACA TACTTGGGTT TACAAACCCT TTACGACCGT TACTTCCTGC ACAGCAATGA CGTTCGTATA GAATTGCCAC AAATATTCTT TATGCGCGTA GCAATGGGCT TAGCGGCTAA CGAAGAGAAC AAAAACGAGC GCGCGGTAGA ATTCTATCGT CTATTAAGCT CCTTCGATTA CATGAGCTCT ACCCCAACCC TATTTAACGC AGGCACATTG CGTCCTCAGC TATCATCTTG TTACTTAACC ACAGTACCCG ATGACCTACA CGGCATTTAC GGTGCGATGC AAGATAACGC CATGCTCTCT AAATGGGCTG GTGGTTTAGG TAACGATTGG ACACCTGTAC GCGGTTTAGG TGCGTACATT AAAGGCACCA ACGGTAAATC TCAGGGTGTT GTGCCTTTTC TTAAGGTAGC CAACGACACA GCGGTAGCGG TAAACCAAGG TGGCAAGCGT AAAGGTGCAG TATGTGCGTA CTTAGAAACG TGGCACATGG ATATAGAAGA GTTCTTAGAG CTGCGTAAAA ACACCGGTGA TGACCGTCGC CGTACCCACG ATATGAACAC CGCTAACTGG GTACCCGATC TATTCATGAA GCGCGTATTT GAAGAGAAAG AATGGACCCT TTTCTCGCCA AACGACGTAC CCGACTTGCA CGACCTATTT GGTAGAGCAT TCGAAGACCG TTACGAAGAA TACGAGCGTC AAGCAGCAGC GGGTAAAATT CGTGTACACA AAAAAGTGCG CGCCTTAGAC TTATGGCGCA AAATGCTAGG CATGCTGTTC GAAACAGGCC ACCCTTGGAT TACCTTTAAA GACGCCTGTA ACCTGCGCAG CCCACAACAA CACGCCGGTG TGGTTCACTC TTCTAATTTG TGTACCGAAA TTACTCTCAA CACCAAGGCT AACGAAGAAA TTGCAGTATG TAACCTAGGC TCTATTAACT TGGCGCAACA CATTGTTGAC GGCAAGCTGG ATGAAGAGAA GCTTGCGCAA ACGGTAAAAA CTGCAGTGCG CATGCTAGAT AACGTAATTG ACATTAACTA CTACGCAGTG GAAAGTGCGC GCACCTCTAA CATGCGCCAT CGCCCAGTTG GCTTAGGCCT TATGGGCTTC CAAGACGCGC TATACAAAAT GAATATCTCC TATAGCAGCG ACGACGCCGT TACCTTCGCC GACCGCTCTA TGGAAGCTAT CAGCTACCAT GCTATTAAAG CGTCTAGCGA ATTAGCCAAA GAGCGCGGCA GCTACTCTAC TTTTGATGGG TCTTTATGGA GCAAAGGTAT TCTGCCTTTA GATTCCCTCG ACCTATTAAT AGAAAACCGT GGCGAGAAAT TCATTAAAGT TGATAAGTCG TCTACCCACG ACTGGGATAC CCTACGCGAA ACTGTTAAAA CTCAGGGTAT GCGCAACTCT AACGTAATGG CAATTGCACC TACAGCTACC ATTGCCAACA TTACTGGTGT GTCGCAATCT ATCGAACCTA CTTACCAAAA CCTCTATGTA AAATCGAACC TTTCCGGCGA ATTTACAGTG GTTAACCCTT ACTTGGTTCA CGATCTAAAA GAGCGCGGCC TATGGGATTC GGTAATGGTT AACGACCTAA AATACTACGA AGGGTCTTTG CAAAAAATTG ATCGCATACC AGAAGATTTA AAAGCGCTTT ACTCAACGGC GTTTGAAGTT GAGCCGCGCT GGATTGTAGA AGCGGCAAGC CGTCGTCAAA AATGGATTGA TCAGGCTCAA AGCTTGAACC TTTATATTGC TGGCGCAAAC GGTAAAAAGC TCGACATCAC CTATCGCATG GCGTGGTACA GCGGCCTTAA AACCACTTAC TACTTGCGCG CACTGTCGGC GACAACTACA GAGAAATCCA CAGTTACCTC TGGCACACTT AACGCAGTAT CATCCGGTGG CGGCGCGAGC CAAAGCGCAG CTGCAGCAGC AGAACCTGCA CCTGCAGCGG TTCCACTAGC TTGCTCTTTG GATGACCCAG ATTGCGAAGC TTGCCAGTAA
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Protein sequence | MQTTETENTG KPQGSPIADN ASSSSTINAT APGQLRVIKR NGTVVPYTDD KISVAMTKAF LAVEGGTAAA SRRIHETVEG LTAQISATFK RRMPSGGTIH IEEIQDQVEL TLMRAGEHKV ARDYVIYRAK RAEQRTPAVN VEDVNFSDFP EINVVDHNGD RHPLDIDRIK TVVAEACAGL KDVDADAILK EAMRSLYDGV SLTDLNTALV ISARTLVEKE PNYTYATSRL LMDKLRAEAL SFLGIAEEAT QAEMETLYAK TLPAYIEKGI ELDLISPDLA SYDLNMLGNA LIAERDLQFT YLGLQTLYDR YFLHSNDVRI ELPQIFFMRV AMGLAANEEN KNERAVEFYR LLSSFDYMSS TPTLFNAGTL RPQLSSCYLT TVPDDLHGIY GAMQDNAMLS KWAGGLGNDW TPVRGLGAYI KGTNGKSQGV VPFLKVANDT AVAVNQGGKR KGAVCAYLET WHMDIEEFLE LRKNTGDDRR RTHDMNTANW VPDLFMKRVF EEKEWTLFSP NDVPDLHDLF GRAFEDRYEE YERQAAAGKI RVHKKVRALD LWRKMLGMLF ETGHPWITFK DACNLRSPQQ HAGVVHSSNL CTEITLNTKA NEEIAVCNLG SINLAQHIVD GKLDEEKLAQ TVKTAVRMLD NVIDINYYAV ESARTSNMRH RPVGLGLMGF QDALYKMNIS YSSDDAVTFA DRSMEAISYH AIKASSELAK ERGSYSTFDG SLWSKGILPL DSLDLLIENR GEKFIKVDKS STHDWDTLRE TVKTQGMRNS NVMAIAPTAT IANITGVSQS IEPTYQNLYV KSNLSGEFTV VNPYLVHDLK ERGLWDSVMV NDLKYYEGSL QKIDRIPEDL KALYSTAFEV EPRWIVEAAS RRQKWIDQAQ SLNLYIAGAN GKKLDITYRM AWYSGLKTTY YLRALSATTT EKSTVTSGTL NAVSSGGGAS QSAAAAAEPA PAAVPLACSL DDPDCEACQ
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