Gene Sde_2458 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2458 
Symbol 
ID3965405 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp3108235 
End bp3111144 
Gene Length2910 bp 
Protein Length969 aa 
Translation table11 
GC content48% 
IMG OID637921549 
Productribonucleotide-diphosphate reductase subunit alpha 
Protein accessionYP_527930 
Protein GI90022103 
COG category[F] Nucleotide transport and metabolism 
COG ID[COG0209] Ribonucleotide reductase, alpha subunit
[COG1328] Oxygen-sensitive ribonucleoside-triphosphate reductase 
TIGRFAM ID[TIGR02506] ribonucleoside-diphosphate reductase, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0127946 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAAACAA CTGAAACGGA AAACACAGGT AAACCTCAGG GCTCCCCTAT AGCAGACAAT 
GCTTCTTCCT CTTCTACCAT CAACGCTACA GCACCAGGCC AACTGCGCGT TATTAAACGT
AACGGCACCG TTGTACCCTA TACAGACGAC AAGATCTCTG TAGCTATGAC CAAAGCCTTT
TTGGCGGTTG AAGGTGGCAC CGCTGCTGCT TCACGTCGTA TTCACGAAAC AGTAGAAGGG
TTGACCGCTC AGATTTCCGC GACGTTCAAG CGCCGCATGC CCTCGGGTGG CACCATCCAC
ATTGAAGAAA TTCAAGACCA AGTTGAACTT ACATTAATGC GTGCGGGCGA ACACAAAGTT
GCGCGTGACT ACGTTATTTA CCGTGCTAAA CGTGCCGAGC AACGTACCCC TGCCGTTAAC
GTAGAAGATG TAAACTTTAG CGATTTCCCC GAAATTAATG TTGTAGACCA CAACGGCGAT
CGTCACCCTC TCGATATCGA CCGTATTAAA ACCGTTGTTG CAGAAGCGTG TGCAGGCCTT
AAAGATGTGG ATGCAGACGC TATATTAAAA GAAGCCATGC GCAGCCTGTA CGACGGCGTA
TCGCTTACTG ATCTGAACAC CGCGTTGGTT ATTTCTGCGC GTACTCTTGT TGAAAAAGAG
CCTAACTACA CTTACGCAAC ATCGCGCCTA TTAATGGACA AGTTGCGTGC TGAGGCACTT
AGCTTTTTGG GTATAGCTGA AGAAGCAACT CAAGCCGAAA TGGAAACCCT GTACGCTAAA
ACGCTACCAG CTTACATTGA AAAAGGTATA GAGCTAGACC TCATCTCACC TGATCTAGCC
TCTTACGACC TTAACATGCT TGGCAATGCA CTTATCGCTG AGCGCGACTT GCAGTTCACA
TACTTGGGTT TACAAACCCT TTACGACCGT TACTTCCTGC ACAGCAATGA CGTTCGTATA
GAATTGCCAC AAATATTCTT TATGCGCGTA GCAATGGGCT TAGCGGCTAA CGAAGAGAAC
AAAAACGAGC GCGCGGTAGA ATTCTATCGT CTATTAAGCT CCTTCGATTA CATGAGCTCT
ACCCCAACCC TATTTAACGC AGGCACATTG CGTCCTCAGC TATCATCTTG TTACTTAACC
ACAGTACCCG ATGACCTACA CGGCATTTAC GGTGCGATGC AAGATAACGC CATGCTCTCT
AAATGGGCTG GTGGTTTAGG TAACGATTGG ACACCTGTAC GCGGTTTAGG TGCGTACATT
AAAGGCACCA ACGGTAAATC TCAGGGTGTT GTGCCTTTTC TTAAGGTAGC CAACGACACA
GCGGTAGCGG TAAACCAAGG TGGCAAGCGT AAAGGTGCAG TATGTGCGTA CTTAGAAACG
TGGCACATGG ATATAGAAGA GTTCTTAGAG CTGCGTAAAA ACACCGGTGA TGACCGTCGC
CGTACCCACG ATATGAACAC CGCTAACTGG GTACCCGATC TATTCATGAA GCGCGTATTT
GAAGAGAAAG AATGGACCCT TTTCTCGCCA AACGACGTAC CCGACTTGCA CGACCTATTT
GGTAGAGCAT TCGAAGACCG TTACGAAGAA TACGAGCGTC AAGCAGCAGC GGGTAAAATT
CGTGTACACA AAAAAGTGCG CGCCTTAGAC TTATGGCGCA AAATGCTAGG CATGCTGTTC
GAAACAGGCC ACCCTTGGAT TACCTTTAAA GACGCCTGTA ACCTGCGCAG CCCACAACAA
CACGCCGGTG TGGTTCACTC TTCTAATTTG TGTACCGAAA TTACTCTCAA CACCAAGGCT
AACGAAGAAA TTGCAGTATG TAACCTAGGC TCTATTAACT TGGCGCAACA CATTGTTGAC
GGCAAGCTGG ATGAAGAGAA GCTTGCGCAA ACGGTAAAAA CTGCAGTGCG CATGCTAGAT
AACGTAATTG ACATTAACTA CTACGCAGTG GAAAGTGCGC GCACCTCTAA CATGCGCCAT
CGCCCAGTTG GCTTAGGCCT TATGGGCTTC CAAGACGCGC TATACAAAAT GAATATCTCC
TATAGCAGCG ACGACGCCGT TACCTTCGCC GACCGCTCTA TGGAAGCTAT CAGCTACCAT
GCTATTAAAG CGTCTAGCGA ATTAGCCAAA GAGCGCGGCA GCTACTCTAC TTTTGATGGG
TCTTTATGGA GCAAAGGTAT TCTGCCTTTA GATTCCCTCG ACCTATTAAT AGAAAACCGT
GGCGAGAAAT TCATTAAAGT TGATAAGTCG TCTACCCACG ACTGGGATAC CCTACGCGAA
ACTGTTAAAA CTCAGGGTAT GCGCAACTCT AACGTAATGG CAATTGCACC TACAGCTACC
ATTGCCAACA TTACTGGTGT GTCGCAATCT ATCGAACCTA CTTACCAAAA CCTCTATGTA
AAATCGAACC TTTCCGGCGA ATTTACAGTG GTTAACCCTT ACTTGGTTCA CGATCTAAAA
GAGCGCGGCC TATGGGATTC GGTAATGGTT AACGACCTAA AATACTACGA AGGGTCTTTG
CAAAAAATTG ATCGCATACC AGAAGATTTA AAAGCGCTTT ACTCAACGGC GTTTGAAGTT
GAGCCGCGCT GGATTGTAGA AGCGGCAAGC CGTCGTCAAA AATGGATTGA TCAGGCTCAA
AGCTTGAACC TTTATATTGC TGGCGCAAAC GGTAAAAAGC TCGACATCAC CTATCGCATG
GCGTGGTACA GCGGCCTTAA AACCACTTAC TACTTGCGCG CACTGTCGGC GACAACTACA
GAGAAATCCA CAGTTACCTC TGGCACACTT AACGCAGTAT CATCCGGTGG CGGCGCGAGC
CAAAGCGCAG CTGCAGCAGC AGAACCTGCA CCTGCAGCGG TTCCACTAGC TTGCTCTTTG
GATGACCCAG ATTGCGAAGC TTGCCAGTAA
 
Protein sequence
MQTTETENTG KPQGSPIADN ASSSSTINAT APGQLRVIKR NGTVVPYTDD KISVAMTKAF 
LAVEGGTAAA SRRIHETVEG LTAQISATFK RRMPSGGTIH IEEIQDQVEL TLMRAGEHKV
ARDYVIYRAK RAEQRTPAVN VEDVNFSDFP EINVVDHNGD RHPLDIDRIK TVVAEACAGL
KDVDADAILK EAMRSLYDGV SLTDLNTALV ISARTLVEKE PNYTYATSRL LMDKLRAEAL
SFLGIAEEAT QAEMETLYAK TLPAYIEKGI ELDLISPDLA SYDLNMLGNA LIAERDLQFT
YLGLQTLYDR YFLHSNDVRI ELPQIFFMRV AMGLAANEEN KNERAVEFYR LLSSFDYMSS
TPTLFNAGTL RPQLSSCYLT TVPDDLHGIY GAMQDNAMLS KWAGGLGNDW TPVRGLGAYI
KGTNGKSQGV VPFLKVANDT AVAVNQGGKR KGAVCAYLET WHMDIEEFLE LRKNTGDDRR
RTHDMNTANW VPDLFMKRVF EEKEWTLFSP NDVPDLHDLF GRAFEDRYEE YERQAAAGKI
RVHKKVRALD LWRKMLGMLF ETGHPWITFK DACNLRSPQQ HAGVVHSSNL CTEITLNTKA
NEEIAVCNLG SINLAQHIVD GKLDEEKLAQ TVKTAVRMLD NVIDINYYAV ESARTSNMRH
RPVGLGLMGF QDALYKMNIS YSSDDAVTFA DRSMEAISYH AIKASSELAK ERGSYSTFDG
SLWSKGILPL DSLDLLIENR GEKFIKVDKS STHDWDTLRE TVKTQGMRNS NVMAIAPTAT
IANITGVSQS IEPTYQNLYV KSNLSGEFTV VNPYLVHDLK ERGLWDSVMV NDLKYYEGSL
QKIDRIPEDL KALYSTAFEV EPRWIVEAAS RRQKWIDQAQ SLNLYIAGAN GKKLDITYRM
AWYSGLKTTY YLRALSATTT EKSTVTSGTL NAVSSGGGAS QSAAAAAEPA PAAVPLACSL
DDPDCEACQ