| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2429 |
|---|
| Symbol | |
|---|
| ID | 3966649 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 3074780 |
|---|
| End bp | 3075475 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 637921520 |
|---|
| Product | ribonuclease T |
|---|
| Protein accession | YP_527901 |
|---|
| Protein GI | 90022074 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0847] DNA polymerase III, epsilon subunit and related 3'-5' exonucleases |
|---|
| TIGRFAM ID | [TIGR01298] ribonuclease T |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 0.759564 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACAATTG AAAACGAAAA ATTAGATGAG AACGGTAAAA CACCTTTTGC AGCTCGATTT
CGCGGTTTTT TGCCCGTAAT TGTTGACGTT GAAACAGGCG GCTTTAACAG CCACACCGAT
GCTCTATTAG AAATTGCTGC AGTTACCCTA AGAATGGATG AAGACGGGGT TCTGCATCGC
CACGAAACCT TCGACTTCCA TGTAGACCCA TTCGAAGGTG CGAACATAGA GCAAAGCGCA
CTGGACTTTA CCGGCATAGA CCTAGACAGC GACGACCGCT GCGCCGTGCC GGAAGATATA
GCCATTAACG AAATTTTCCG CTCTGTACGC AAAGCGGTAA AAGAGAACGG CTGCAACCGC
GCAGTGATGG TTGCACATAA CGCGCACTTC GATTTGGGCT TTGTTAACGC CGCCAGCAAC
CGCTGCGATG TTAAGCGCAA CCCCTTTCAC CCATTCTCGT GCTTCGATAC AGCCACACTA
TCGGGCTTAG CCTTTGGCCA CACCGTTTTA GCACGAGCAT GCCAGCTAGC GAAAATTGAG
TTTAGCAACC GCGAAGCCCA CTCTGCAGCT TACGATGCAG AAAAAACAGC CGACCTGTTT
TGTACAATTG TAAATCGCTG GAAGGATCTA GGTGGCTGGC CACTACCAGT AGGCGACAAT
CTAGCCATGG ATGAAACCAG CCTAGAAGAA GAGTAA
|
|---|
| Protein sequence | MTIENEKLDE NGKTPFAARF RGFLPVIVDV ETGGFNSHTD ALLEIAAVTL RMDEDGVLHR
HETFDFHVDP FEGANIEQSA LDFTGIDLDS DDRCAVPEDI AINEIFRSVR KAVKENGCNR
AVMVAHNAHF DLGFVNAASN RCDVKRNPFH PFSCFDTATL SGLAFGHTVL ARACQLAKIE
FSNREAHSAA YDAEKTADLF CTIVNRWKDL GGWPLPVGDN LAMDETSLEE E
|
|---|
| |