| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2355 |
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| Symbol | |
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| ID | 3967388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2982172 |
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| End bp | 2984727 |
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| Gene Length | 2556 bp |
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| Protein Length | 851 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637921446 |
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| Product | assimilatory nitrite reductase (NAD(P)H) large subunit precursor |
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| Protein accession | YP_527827 |
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| Protein GI | 90022000 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1251] NAD(P)H-nitrite reductase |
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| TIGRFAM ID | [TIGR02374] nitrite reductase [NAD(P)H], large subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000467029 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.479007 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAAGC AAAGAATAGT CGTTGTTGGC AACGGCATGG TAGGTCACAA ATTTATTGAA
AACCTTTTGG CACACGAAAA AGCAGACGAT TATGAAATTG TTGCGTTTTC TGAAGAGCCA
CGTCTAGCCT ACGACCGCGT ACAGCTAAGC AAATACTTCT CTGGCTCTAC CGCCGAAGAT
TTAATGCTTA CATCGGAAGA TTTCTACAAA GAAAATGGCG TTAACTACGT TTTAAACGAA
AAAGTAACCG CTGTTAAGCA CGACGAAAAC AAAGTTGTAG TAGCAAGCGG TAAAGAAATC
GCTTACGACA AATTAATACT TGCTACTGGT TCTTTCCCGT TTGTTCCACC TATTCCTGGT
AAAGATCAGC CGCACTGCTT GGTGTATCGC ACCATTGAAG ATTTGGAAGC CATTACTGCA
TCTGCAAAAG AAAGTAAGGT TGGTGTAGTA GTAGGTGGTG GTTTGCTAGG TTTAGAAGCC
GGTAATGCCC TGCAAAACCT TGGTTTAGAA GTTCACGTTG TTGAATTCGC GCCACGCTTA
ATGGCTGTGC AGTTAGACGA AGGCGGCGGT AACTTACTGC GTAAAAAGAT TGAAGCATTG
GGTGTAAATG TACACACCGA AAAAAATACT CAAGAAATTG TAGCCGGTGA AACCTGTCGC
TACCGTATGA ACTTTGCGGA TGGCTCGCAC CTAGAAACCG ATATGATTTT GTTCTCTGCG
GGTATTCGCC CGCAAGATGA ACTTGCTCGC AATAACGACG TGTTAGAAAT TGGTGAGCGC
GGCGGTATTG TGATTAACAA CAACTGCCAA ACAAACATTG AAAACATTTA TGCCATTGGT
GAATGTGCAT TGTGGGACGG AAAAATATTC GGTCTTGTGG CGCCTGGTTA CCAAATGTCT
AAAGTGGCTA TTTCGCACAT CACTGGCGGC GAAGATCAGT TCACCGGCGC AGATATGAGC
ACCAAACTTA AGTTGCTTGG CGTAGATGTG GCGAGCGTAG GTGATGCACA AGGTCGCACG
CCAGGTTGCT TAAGCTATGT ATACCAAGAT GGTGTAGCCG ACGTATACAA GCGCATTATT
GTAAACGCAG AAAAAACCCG CCTGTTGGGC GCGGTATTGG TAGGCGATGT AGAAGCCTAC
GGTACATTGC AGCAAATGTA CGTAAACGAA ATGGATTTGC CAGAAATGCC CGAGGCCATG
ATTCTGCCGT CTATTGATGG CAGCGCTGCT TCTGCGGGCA TGGGGGTAGA TGCATTACCC
GAAGGCGCCA TTATTTGTAG CTGTAATGAT GTTACTAAAG GCCAGATTTG CTGCGCAGTA
CAAGATGGCT CTGTAACTAT TGGCGATATA AAAGCTAACA CCAAAGCGGG TACTAGCTGT
GGTGGTTGTG TGGCCTTGGC TACCCAAGTA ATGAACTCTG AATTAACCAA GCTTGGTGTA
GAAGTAATTA CTGACTTGTG TGAGCACTTT GCCCACACTC GCCAAGAGCT ACACCACATT
GTGCGCGTAG AAAAAATTAA AACCTTTGGC GAGCTTATTG AAAAGCACGG TACAGGTTTA
GGTTGTGACA TATGTAAGCC TACTGCGGCC TCTATTTTTG CAAGTGTTTG GAACGAATAT
GTATTAGAAA ACCAGCACGC AGGTTTGCAA GACACTAACG ATCACTTTAT GGCAAACATG
CAAAAGAACG GTACTTACTC CATTGTGCCG CGTGTAGCGG GTGGTGAAAT TACCCCAGAA
AAATTGATTG TGTTAGGTCA AGTTGCTCAA AAATATAAGT TGTATACCAA AATTACTGGC
GGTCAGCGTA TCGACTTGTT CGGCGCGCAA CAGCACGAGC TGCCATTAAT TTGGAAAGAG
TTAGTAGATG CAGGTTTTGA AACGGGCCAC GCTTACGGTA AATCTTTACG TACGGTTAAA
TCGTGTGTTG GTTCTACTTG GTGTCGTTAC GGCATGCTAG ATAGCGTTGG CATGGCTATA
CGTTTGGAAG ACCGCTACAA AGGTTTGCGT TCACCACACA AAATTAAATT TGCTGTTTCT
GGTTGCACCC GTGAGTGTGC CGAAGCGCAA AGTAAAGATG TGGGTGTAAT TGCTACCGAA
ACCGGTTGGA GCCTATACCT GTGCGGTAAC GGCGGTATGA AGCCTCGCCA CGCAGACTTG
TTTGCAACCG GCCTAGACGA CGAAACCTTA ATTAAATATA TCGATCGCTT CTTGATGTTT
TACGTGCGCA CCGCAGACCG CTTGCAACGT ACGTCTGTAT GGATGGATAA CCTAGAAGGC
GGTTTAGACT ACCTAAAATC TGTAGTTATT GACGATAAGT TAAATGTAAA CGCAGAGCTA
GAAAGCGAAA TGGCATTGGT AATAGATACC TACCAGTGTG AGTGGAAAAC AACAATTGAA
GACCCAGAGA AACTTAAGCG TTTCCGTACC TTTGTTAACA GCGATGAGAA AGATAACACC
GTTGTATTTG TTGAAGAGCG CGAGCAAATT CGCCCGGCAA CAGAAGAAGA GCGCGTACGT
TTTGTAAATG CCGAAGAAGT GGCTGAAATA GCTTAA
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| Protein sequence | MSKQRIVVVG NGMVGHKFIE NLLAHEKADD YEIVAFSEEP RLAYDRVQLS KYFSGSTAED
LMLTSEDFYK ENGVNYVLNE KVTAVKHDEN KVVVASGKEI AYDKLILATG SFPFVPPIPG
KDQPHCLVYR TIEDLEAITA SAKESKVGVV VGGGLLGLEA GNALQNLGLE VHVVEFAPRL
MAVQLDEGGG NLLRKKIEAL GVNVHTEKNT QEIVAGETCR YRMNFADGSH LETDMILFSA
GIRPQDELAR NNDVLEIGER GGIVINNNCQ TNIENIYAIG ECALWDGKIF GLVAPGYQMS
KVAISHITGG EDQFTGADMS TKLKLLGVDV ASVGDAQGRT PGCLSYVYQD GVADVYKRII
VNAEKTRLLG AVLVGDVEAY GTLQQMYVNE MDLPEMPEAM ILPSIDGSAA SAGMGVDALP
EGAIICSCND VTKGQICCAV QDGSVTIGDI KANTKAGTSC GGCVALATQV MNSELTKLGV
EVITDLCEHF AHTRQELHHI VRVEKIKTFG ELIEKHGTGL GCDICKPTAA SIFASVWNEY
VLENQHAGLQ DTNDHFMANM QKNGTYSIVP RVAGGEITPE KLIVLGQVAQ KYKLYTKITG
GQRIDLFGAQ QHELPLIWKE LVDAGFETGH AYGKSLRTVK SCVGSTWCRY GMLDSVGMAI
RLEDRYKGLR SPHKIKFAVS GCTRECAEAQ SKDVGVIATE TGWSLYLCGN GGMKPRHADL
FATGLDDETL IKYIDRFLMF YVRTADRLQR TSVWMDNLEG GLDYLKSVVI DDKLNVNAEL
ESEMALVIDT YQCEWKTTIE DPEKLKRFRT FVNSDEKDNT VVFVEEREQI RPATEEERVR
FVNAEEVAEI A
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