Gene Sde_2216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2216 
Symbol 
ID3965454 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2818634 
End bp2819365 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content48% 
IMG OID637921306 
Productflagellar basal body P-ring biosynthesis protein-like 
Protein accessionYP_527688 
Protein GI90021861 
COG category[N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1261] Flagellar basal body P-ring biosynthesis protein 
TIGRFAM ID[TIGR03170] flagella basal body P-ring formation protein FlgA 


Plasmid Coverage information

Num covering plasmid clones40 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAGGA ATCGTAGTTT TTTACTTGTA TTTATTTCAC TTACTCTTTT AGTGGCAAAC 
AAAGCAGCGA GCGCCGAAAT TGAGTACATG ACTACGCAAG AGCTACGTCA ACAAATTGAC
CTTTTTGCGC GAAATCACTT CTCTGGGGTG TATACCGACA AAATTTTGGA CAAGGATTTA
AAAATCGACG TTGGCAACCT AGATAGCCGG TTACGCCTCG CCCGCTGCGG CCACCCCTTA
GAGATGAATG TAAACACGCC ATCACATATG ACCGCCAACG CGACAATTAA AACCACCTGT
GCCGGCCCAC ACCGCTGGTC CATTTATGTA CCAGTTGATA TAGAAGTTTA TAGCGAGATA
GTGGTTGCTT CGCGCACCCT AAGACGCGGC GCTACAATTA GCGAAGCCGA CTTAAACGTA
CAGGTTATTA ATATCGCCAG ATACGGCTCT GGCCATGTGC AAGATGCGCA GCGCATTATT
GGTCAAGAGC TTACCCGCTC CGTTAACGCT GGCGAGGCAA TTAAACTCTC TCATGTTCGA
CCCGCGCAGG TTGTGAGTAA AGGCGATACA GTGGTAATTG AAGTACGAGG TAATATGATA
GCCGTAGCGG TAAATGGCGA GGCCCTCGAA AACGGCCACG TTGGCAAACA AATTCGCGTG
CGCAACAATC AATCCAAGCG CGTTGTAGAT GGCGTGGTAA GCGGCCCAGG GCGAGTAAGC
ATTAGCATTT AG
 
Protein sequence
MMRNRSFLLV FISLTLLVAN KAASAEIEYM TTQELRQQID LFARNHFSGV YTDKILDKDL 
KIDVGNLDSR LRLARCGHPL EMNVNTPSHM TANATIKTTC AGPHRWSIYV PVDIEVYSEI
VVASRTLRRG ATISEADLNV QVINIARYGS GHVQDAQRII GQELTRSVNA GEAIKLSHVR
PAQVVSKGDT VVIEVRGNMI AVAVNGEALE NGHVGKQIRV RNNQSKRVVD GVVSGPGRVS
ISI