| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2188 |
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| Symbol | fliF |
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| ID | 3965958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2783820 |
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| End bp | 2785490 |
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| Gene Length | 1671 bp |
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| Protein Length | 556 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637921278 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_527660 |
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| Protein GI | 90021833 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCAAG CGCCCGCGCA TACAAGCACT AACGATCTAA TAGATGGGTT TAACAACCTA
AACATTATTC GCCAAGCCGG TTTAATGGTA GGGCTTGCGG CAAGTGTGGC TATTGGTTTT
GCGGTTGTAC TTTGGAGTCA AGGGGAAGAT TACAAACCGC TATATGGTAG TTTGGATCGA
TTAGATTCTT CTGAAGTAGG CGCGATTTTA GATTTTAACG AGATTCCCTA CAAAATAGAT
GGCTCGACCG GTGCGCTGCT AGTGGCGGTG GATGAAGTGC ATAGAGCGCG CTTGGTGTTA
GCAGAAAATG GCATTCAAGG TGATAACTCA ACGGGTTACG AGTTACTCGA CCAAGAGCAA
CCGTTAGGTA CAAGTCAATT TATGGAAGCA ACGCGCTACA AGCGCGGCAT AGAAGGTGAA
TTGGCTCGAA CTATTGCCAG CATAAATTCG GTACGCGGTG CACGTGTACA CCTAGCAATT
CCAAAGCGCT CTGTATTTGT AGGGGATGGT CGCAAGCCTA GCGCGTCGGT ATTTTTAGAT
TTATACCCAG GCAGGCCCAT CAAACCAAAA CAAATTCAAG GTATTGCTAA TTTGGTAGCT
AGCAGTATTC CAGAGTTGCA AGTAGAGAAT GTTACCGTTG TAGATCAAAA GGGCAACCTA
CTTACTACAG GTATTGCAGA AGACAAAGAC TTACTTATTG CCGGGCAACA TTTGGAATAT
ACGCAAAAAG TAGAAGACGG CATGATAATG CGCGTACGTC GTTTGCTGTC GCCAATATTA
GGCGATCAGA ACTTTAAAAC CGAAGTTGCA GCCGATATTG ATTTTACTGA AATAGAACAA
GCCGAAGAAG TATTTAACCC CGACTTACCC GCTGTGCGCA GCGAGCAAAC CGTCGAAGAA
CAGCGTATTG GCAGTGGCGC GCCTGGCGGC ATTCCTGGTG CCCTTACCAA TCAACCACCC
GCAGATGGGC AGGCGCCAGA GCAAGCTGGG CAGGGCGGCG AAGGTGCAGG TGGTCAACCC
AGTAATACTC GCTCGCAGGC CGTGCGTAAT TACGAGCTAG ATAGAACGGT TAGCTATACC
AAGCGTGAGA AAGGTCGCTT GCGCAGGTTA ACGGTTGCTG TAGTAATAGA CGATAAAAAA
ACAATTAACC CCGAAACTGG CGCCGTAGAG CGCACCCAGT GGACACAGCA AGAACTAGAA
CGCTTCGCTA TACTTGTAAG AGATGCAGTG GGTTACTCTG CTGTGCGGGG TGACAGTGTC
AATATACTCA ACGAAGCGTT TTTACCCGAG CCGGCCATCG AGGTATTGGA CGACCTACCG
TTTTGGCAGA ACGAAAGTAT TTTAAAGCTA ATTAAACCCA TAGCCGGCGC ATTAATTATT
GTAGCGTTGT TGGTGGGGTT AGTACGCCCA GTGCTTAAAA GCTTGGCTGT GGCGGGAGTA
AAAACAAGAG AGCAAGACGA AGCGAAAGAA ATGGCCGCAT TGCAAGCTGC AGGTATGGAT
GGTTTTGACT CGCTTTCGGA TGAAACGGTT ACCCTCACCG GTGGGGATGC ACTTGCACTA
CCCAGCCCAG AAGAAGGGTA CGAACAGCAG CTTAATGCTG TGAAGGGGCT AGTGGCAGAA
GATGCTGGTC GTGTGGCACA AGTAATTAAA CGATGGATAA ATGAAGAATG A
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| Protein sequence | MAQAPAHTST NDLIDGFNNL NIIRQAGLMV GLAASVAIGF AVVLWSQGED YKPLYGSLDR
LDSSEVGAIL DFNEIPYKID GSTGALLVAV DEVHRARLVL AENGIQGDNS TGYELLDQEQ
PLGTSQFMEA TRYKRGIEGE LARTIASINS VRGARVHLAI PKRSVFVGDG RKPSASVFLD
LYPGRPIKPK QIQGIANLVA SSIPELQVEN VTVVDQKGNL LTTGIAEDKD LLIAGQHLEY
TQKVEDGMIM RVRRLLSPIL GDQNFKTEVA ADIDFTEIEQ AEEVFNPDLP AVRSEQTVEE
QRIGSGAPGG IPGALTNQPP ADGQAPEQAG QGGEGAGGQP SNTRSQAVRN YELDRTVSYT
KREKGRLRRL TVAVVIDDKK TINPETGAVE RTQWTQQELE RFAILVRDAV GYSAVRGDSV
NILNEAFLPE PAIEVLDDLP FWQNESILKL IKPIAGALII VALLVGLVRP VLKSLAVAGV
KTREQDEAKE MAALQAAGMD GFDSLSDETV TLTGGDALAL PSPEEGYEQQ LNAVKGLVAE
DAGRVAQVIK RWINEE
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