| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2141 |
|---|
| Symbol | |
|---|
| ID | 3967525 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 2731651 |
|---|
| End bp | 2732367 |
|---|
| Gene Length | 717 bp |
|---|
| Protein Length | 238 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637921231 |
|---|
| Product | orotidine-5'-phosphate decarboxylase |
|---|
| Protein accession | YP_527613 |
|---|
| Protein GI | 90021786 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0284] Orotidine-5'-phosphate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01740] orotidine 5'-phosphate decarboxylase, subfamily 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATTC CAGATCCTCA ACTCGTTATT GCACTCGATT TTGACACCCA AGAGTCCTGC
TTGGAGCTTG TAGACCAACT AGACCCAACG CTTTGCCGTT TAAAAATTGG TAAAGAGCTG
TTTACTTCCT GTGGGCCTAA AATTGTCGAA AAGATACAGT GGAAAGGGTT TGACGTATTC
CTCGATTTGA AATTTCACGA TATACCCAAT ACCGTAGCAA AAGCGGTTAA GGCTGCAGCC
GAGTTGGGCG TATGGATGGT GAACGTACAC GCGAGTGGCG GCGAAAAAAT GATGCTAGCC
GCAAGAGAAG CGTTAGAAGG TTATCAAGTT AAGCCTTTGT TAATTGCAGT TACCGTACTA
ACCAGTATGA GCGACGAAGA CTTAAAAGCG CTTGGCATTA CTGTAACCGC TGCCGAGCAA
GTTCAGCGTT TAGCTGCGTT AGCTAAGCAG GCGCAAATGG ATGGCGTTGT ATGCTCGGCG
CAAGAGGTTG TTCAGCTTAA AGCATCCCTC GGCGAAGAGT TTAAAATGAT AACCCCCGGT
ATTCGCCCAT CTTTTGCGGG TAATGACGAC CAAACGCGTA TTATGACCCC AGAGCAAGCA
CTTAAAGCGG GTAGCGATTA CCTAGTTGTT GGTCGCCCAG TAACCCAAGC GGACGACCCT
TTGCGTGCGC TAGAGCAAAT TGCCGCAGAA ATGGCTCGTG CATCACTAGG TAGCTAG
|
|---|
| Protein sequence | MNIPDPQLVI ALDFDTQESC LELVDQLDPT LCRLKIGKEL FTSCGPKIVE KIQWKGFDVF
LDLKFHDIPN TVAKAVKAAA ELGVWMVNVH ASGGEKMMLA AREALEGYQV KPLLIAVTVL
TSMSDEDLKA LGITVTAAEQ VQRLAALAKQ AQMDGVVCSA QEVVQLKASL GEEFKMITPG
IRPSFAGNDD QTRIMTPEQA LKAGSDYLVV GRPVTQADDP LRALEQIAAE MARASLGS
|
|---|
| |