Gene Sde_2054 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_2054 
Symbol 
ID3967438 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2634389 
End bp2634985 
Gene Length597 bp 
Protein Length198 aa 
Translation table11 
GC content48% 
IMG OID637921144 
Productresponse regulator receiver domain-containing protein 
Protein accessionYP_527526 
Protein GI90021699 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.595634 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACCAAAA TACTAGTAGC TGACGATCAC GACTTAGTGC GCATGGGTAT AGTGCGCATG 
TTGAGTGACG TCGAAGGCAT AGAGGTGGTA GGTGAAGCCT GTAATGGCGA AGATGCCGTA
CGCCTCGCCA GAGAATTGGC GCCAGACGTT ATTCTAATGG ACGTAAAAAT GCCTGGTATG
GGCGGCTTAG AAGCAACGCG AAAAATTCAT CAGGCGTGTA GTGGCTGTAA AATTATTGCT
GTTACCGCTT TGTCAGACGA CCTGTTTCCA GAGCGCCTTA TGAAGGCGGG CGCCGCAGGT
TATGTTACCA AGGGTGCCGG TTTCGAAGAG ATAGTAAACG CCATTCGCAC AGTGTTGAAC
GGGGACCTCT ATATGAGCTC TAGCATTGCG CAGCAGTTAG CCTTGCGTAA TTTTGGTTCT
TCTAAAGGCT CTGCATCACC ATTTGAGCAG TTATCCGAGC GCGAGCTGCA AACGGCTATA
ATGATTGCGA ACAGTAAAAA GGTGCACGAA ATAGCAGAGG CATTTTGTGT AAGTCCTAAA
CGGTCAATAG TTACCGCTAC CGCATATTCG ATAAGCTCAA AATCAACAGT GATGTAG
 
Protein sequence
MTKILVADDH DLVRMGIVRM LSDVEGIEVV GEACNGEDAV RLARELAPDV ILMDVKMPGM 
GGLEATRKIH QACSGCKIIA VTALSDDLFP ERLMKAGAAG YVTKGAGFEE IVNAIRTVLN
GDLYMSSSIA QQLALRNFGS SKGSASPFEQ LSERELQTAI MIANSKKVHE IAEAFCVSPK
RSIVTATAYS ISSKSTVM