| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_2046 |
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| Symbol | |
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| ID | 3967405 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2579011 |
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| End bp | 2583120 |
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| Gene Length | 4110 bp |
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| Protein Length | 1369 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637921134 |
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| Product | tryptophan synthase, beta chain |
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| Protein accession | YP_527518 |
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| Protein GI | 90021691 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG5271] AAA ATPase containing von Willebrand factor type A (vWA) domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.80342 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTTAA AACGATTAAA GCAATGCTCT TATCCGGTAG TAGCACTAAT AATGCTGCTA
ATTCCGCACA TAGCATCCGC AGAAATGACA TTGCTAGAGG GGAAGGTTAC TTACACTGAG
TCCAATAAAA CCAGTACGCT TGATCGTCGT ACGAGAAAAA TAGTCAACAG CGCATTAATT
ACTGTTACTA ATACATCGCA GGAGCAAATA AATACCCCCC TGCATGCAGT TATTTCCACG
TCAATAACTG GGGTAGAGTT TCAAGAAGCC TTTGGCGGAG AGGGGGTGGC GCCTTACGAC
AAATATTATT ATGACCTATC TGAGTCCGTT CCAGCTGGGC TGGCACCACA AGAATCCGTT
AGTTTTACGA TGCGATCTAT ATCTAGTAGG GGGTATTCTT TTACTATCGA ATTCTATGGT
GAACTATCAG TTAGCGGTGT GACTGATAGC GACGGAGATG GCGTAGAAGA CAGTAATGAC
GCTTGTGATA CCCAAGATGG AGTTCTAGCT AAAGATCTAG ACAATGACGG CTGTGACGAT
ACCGATGAAG ATCTAGATGA TGATAATGAC GGTAGACTCG ATACCGCAGA TAGTTGTTTT
ACGATAGATT TTCATTTGTC ATCAGATTTT GATAATGACG GCTGCGATGA TGCAGATGAA
GACGCCGATG ATGATAATGA TGGCGTAAGC GACGAGTTTG ATGCATGCCG TACGGAAGAC
TTTCATCTAG AAGCCGATTT AGATAACGAC GGCTGCGATG ATGCGAACGA AGATACAGAC
GATGATAACG ACGGCGTACA AGATTCTGTA GATGCATGTT ACACGGCTGA TTTTCATCTT
AATGAAGATG CAGACGGCGA TGGCTGTGAC GATACCAACG AAGATAACGA CATCGACAAT
GATGGTGTGC TAAACGCTGT TGATAGTTGC TTTACCGCAG ATTTTAATCT CGCATCTGAC
TTTGATAGCG ATGGTTGCGA CGACACCGAT GAAGATAAAG ATGATGACAA CGATGGTGTT
GAAGATACTG TAGATAGCTG TGTAACAGCA GATTTTCATT TGGCTGCAGA TGTAGATAAT
GATGGCTGCG ACGATACCGA TGAAGATCCA GATTTCAATA ACCCAAACGA TACTGACTTG
GATGGTGTGC CAAACGACGT AGATAGTTGT AATACGGTCG ATGGCAATTT AAGTCAAGAC
TTCGATATGG ACGGTTGTGA CGATGCTGAC GAAGATAAAG ACGATGATAA CGACGGTGTT
GAAGATACTG GCGACGCTTG TTTAACAGCC GATTACCATT TATCCGCCGA TGCAGATTCA
GATGGTTGTG ATGATGCCAA TGAAGACAAG GATGACGATA ACGACGGCGT AGAAGACGAA
TTAGATCAAT GCGCAGGCAC AGCACCTAAC GTAAGCGTGA ATGCCAACGG TTGCGAGGAT
GATCAGTCAG ATTCAATTGC ACCTTCAGTT GTGGTTAATA ATCCGCTTGC TACTACAAGT
AATTCTGGGG AAACATTTAC CGGTACGGCT ACAGATAATA AATCAATAGA ATCACTTTTC
GCCGTTAGCG GTCGTTACCC TAACTTAACT TTTGAGTTAG AGGTGGTTGG CGATAATTGG
TCGTTGTGGA TGCCTCTAGA AGTGGGTGAC AACCAAATTT CTATTCATGC TATTGATGGC
GACGGTAATG AAACGGTCGA TACATTTACC GTAGTTCGTG AAGAAAGTAG GGTGAATGCA
GATCTGGTTA TTCTTTCGCC TTCAGCTAGC TCCACGGTGA ATCACGCGAG TATTACCGTT
ACGGGTAATG TCATTAGTGA AAAAGCGGCA AATCAAATTA GCGTAACCAT CAATGGTGTG
CCTGCCGCAC TTTCACCAAC GTCGGATGTA ACTATTACGC AATTTTCCCT ACAGAATATT
GAGCTGCAAG AAGGGGCAAA TATTCTTGAG GTTCAAGCAA TAGTTGATTA CGAGCTATAC
ACCGACGAAA TTTTGAATGC GTCGGTTGTA GTAAATTATC AGCCAGAACA AGAAGAGTCG
CGAGCGCCCG AAATTACTAT TGTTAAACCC TCATCTAATA GCTACCTCGC AACAAGCGAT
TTTTACATAA CACTCAATTA CACAAGCTAT AGCGGTGGGG CACACATTAC TATTAATGGC
ACGCCTGTGG TGCTTGGTAA TAAGCAATAC GGCACAATCA GCGAGCTACT TAACTTTCCT
GCTGGCCAAG AGAGCTGGGA TGTTAATGTG GAAATTACTG ATAGCTCTTC TAAGGTTACC
TCACTGCAAG TTACCTACTA TTTGGATACA ACAGCGCCAG TTCTTCAATT AGATAACGCT
ATCCAGCCTT CGCCCGTTAT TAATACGGTA ACGGAGCAGC CTTATACACT AAGCGGAACA
GTCGCCGATT CGCAAATAGC GAGCTTAACT ATCAACGGTA GCTCAATAGC TTTGCAGCCA
ACGTCTAATG CCGGTGTTTA CACATTTTCT GCTCAGCTGG GCTTAAGCTT AGATAGTATT
TTAAGCGTGA ATATAGAGGC CAAAGACTAC AGCGGTAACA CCACAGCAAC TGAATATAGT
TTTGAATTGG ATAGTAATGT GTCTATGAGC ATGTTATTGC CTCCAGCAAA TACAAAACTC
ATCAATCTAG GCCAACCCAT TAATTTGCAG GTAGCGGCAA GATTAGTAGG CGTAGTAGAT
AACTACAGTG CAAAAGGCGT TATAAAACAA GGTAATAATA TTATTGCCGA GTCGCTATTA
AATATAGGTG ACGGTTTAGC TTCAGGCTAT ATAGAAACTC CTCTACAGGC TGGTAGTTAC
ACAATAGAAA TATCTTTGTT AGATCAAGGG GTGGAGTTAA CTAAAACAAC TCGCACTATT
TCTGTAGAAA ACAATCAGGA TGTGCCGTTA CAGCTAGTTA ATATAGAGCC AAACAATGGC
GAGCAGCATA TTGAGACCAA CGTTCCTATT ACGCTGTATT TTAATAAAGC TATAGATCCA
GCAAAGCTTA ATGTAGAAGT ACGCGAGACA GCTCACGGCT TTAGCTATAT AAACAGTGAC
CCGCACGGCA CAGAAGGTTT TCAAGCTAAG GGCTATCAGC TTGTTAAAGT GGATATAGAC
GATGAGCCAG TAACCGGAGG GATTTCCGTA TTGCCTGGTG CTAGGGTGAT TGGGTTTTAT
CCTTCTCGCG AATTCGCATA TAAATCTACG GTACAGGTGA CGGTAACTTA CGACGGTGAA
GAATATTCTC GCAGTCGGTT TAATACACGT GAATTACCGA CATTTGTTGA CGGTGCGGTA
CTCGACCAAT TTGGTCAGCC TGTGCCCGGG GCCGTTGTTG AGCTGGTTGA GCTGAATCGT
CAAACAGTAT CTGATGCCTC TGGTGTATTC GGTTTTGGTT ATGGGGATAA ACCAACGGAA
TCCTTACCCG ATGGTCGCTT TACATTACGT ATTAACAGCG GCTTTAAATT ACCCGACTTT
GGTACCTTGC AGAAAAAAGT ATTCATAAAC AAAGGTGAAA AAACGCGCGT GGGCGGCCAG
GTATTGGCCG CGTTAAATAA AGATGATGCC TTTAGTTCAC TACAAAAAAA TGCTCAAGTG
CACTTGGCGA AGGGCGATCT CAAGCTAGAT ACAACTAACG CAAACGTGTT TTTTGCAGAC
GGCAAAACCT CTGGGTTTGC TATGGCGTTA TTTATGCCTG CTGGTTCGTT CCCACACAGT
TACGACCCAA TGTTTATGCC ATATTGGTTG TATGGTATTC ATCCTATGGG TATAGAAATT
GATGGTGAAA TAGGTATCGA TTTCGCCTTA CCAAAACTAG AGCTTATACA AGATTATGTT
TGGGATGATG GCGCATATGT TTTATTGGTG GGCTTAGACC CAGAAAAAGA CATCATTGTA
CCCGTTGGTG TAGGCATAGT TGAAAACCAC AGAGTTAAAT CGTTGCGTGC TGAATACAGC
CGCCTAGATT ACATAGGCTA CGCACCTATG CCCGAACAAG TGTTTGAGCA TATGCAAAGT
TATGCCGAGC AAGGTATGAG TTTAAGTATG ATGGTTACAA AAATTAGAAG TCTTCTTACC
AGTGTTCCTT CTGGCGAAGG GAATCAATAA
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| Protein sequence | MFLKRLKQCS YPVVALIMLL IPHIASAEMT LLEGKVTYTE SNKTSTLDRR TRKIVNSALI
TVTNTSQEQI NTPLHAVIST SITGVEFQEA FGGEGVAPYD KYYYDLSESV PAGLAPQESV
SFTMRSISSR GYSFTIEFYG ELSVSGVTDS DGDGVEDSND ACDTQDGVLA KDLDNDGCDD
TDEDLDDDND GRLDTADSCF TIDFHLSSDF DNDGCDDADE DADDDNDGVS DEFDACRTED
FHLEADLDND GCDDANEDTD DDNDGVQDSV DACYTADFHL NEDADGDGCD DTNEDNDIDN
DGVLNAVDSC FTADFNLASD FDSDGCDDTD EDKDDDNDGV EDTVDSCVTA DFHLAADVDN
DGCDDTDEDP DFNNPNDTDL DGVPNDVDSC NTVDGNLSQD FDMDGCDDAD EDKDDDNDGV
EDTGDACLTA DYHLSADADS DGCDDANEDK DDDNDGVEDE LDQCAGTAPN VSVNANGCED
DQSDSIAPSV VVNNPLATTS NSGETFTGTA TDNKSIESLF AVSGRYPNLT FELEVVGDNW
SLWMPLEVGD NQISIHAIDG DGNETVDTFT VVREESRVNA DLVILSPSAS STVNHASITV
TGNVISEKAA NQISVTINGV PAALSPTSDV TITQFSLQNI ELQEGANILE VQAIVDYELY
TDEILNASVV VNYQPEQEES RAPEITIVKP SSNSYLATSD FYITLNYTSY SGGAHITING
TPVVLGNKQY GTISELLNFP AGQESWDVNV EITDSSSKVT SLQVTYYLDT TAPVLQLDNA
IQPSPVINTV TEQPYTLSGT VADSQIASLT INGSSIALQP TSNAGVYTFS AQLGLSLDSI
LSVNIEAKDY SGNTTATEYS FELDSNVSMS MLLPPANTKL INLGQPINLQ VAARLVGVVD
NYSAKGVIKQ GNNIIAESLL NIGDGLASGY IETPLQAGSY TIEISLLDQG VELTKTTRTI
SVENNQDVPL QLVNIEPNNG EQHIETNVPI TLYFNKAIDP AKLNVEVRET AHGFSYINSD
PHGTEGFQAK GYQLVKVDID DEPVTGGISV LPGARVIGFY PSREFAYKST VQVTVTYDGE
EYSRSRFNTR ELPTFVDGAV LDQFGQPVPG AVVELVELNR QTVSDASGVF GFGYGDKPTE
SLPDGRFTLR INSGFKLPDF GTLQKKVFIN KGEKTRVGGQ VLAALNKDDA FSSLQKNAQV
HLAKGDLKLD TTNANVFFAD GKTSGFAMAL FMPAGSFPHS YDPMFMPYWL YGIHPMGIEI
DGEIGIDFAL PKLELIQDYV WDDGAYVLLV GLDPEKDIIV PVGVGIVENH RVKSLRAEYS
RLDYIGYAPM PEQVFEHMQS YAEQGMSLSM MVTKIRSLLT SVPSGEGNQ
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