| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1893 |
|---|
| Symbol | |
|---|
| ID | 3966957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 2389080 |
|---|
| End bp | 2391704 |
|---|
| Gene Length | 2625 bp |
|---|
| Protein Length | 874 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637920978 |
|---|
| Product | bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase |
|---|
| Protein accession | YP_527365 |
|---|
| Protein GI | 90021538 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1049] Aconitase B |
|---|
| TIGRFAM ID | [TIGR00117] aconitate hydratase 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000010006 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCTAGAAG CATACCGCGA ACACGTTGCC GAACGCGCAG CACTGGGCAT TCCACCCAAA
CCACTTTCTC CAGAGCAAGT TGCCGATTTG GTAGAGCTTC TTAAAAATCC GCCCGCTGGC
GAAGAAGAAA CTTTGGTAGA CCTTATCAGC AATCGCGTAC CACCTGGCGT AGATGAAGCT
GCATACGTAA AAGCTGGTTT CCTATCTGCT ATTGCTAAAG GCGAAACCAC TTGTTCTCTT
ATCAGCAAAC AAGATGCTGT TGTACTGCTT GGCAATATGC ACGGCGGCTA CAACATTGAA
ACCTTGGTTG CTTTGTTAGA CGACGCAGAA TTAGCAAGCC TAGCTGCCAA AGAATTAAAA
CACACCCTAT TGATGTTCGA CGCCTTCCAC GATGTGGAAG AAAAAGCCAA AGCTGGCAAC
GCAAACGCAC AAGAAGTTAT GCAATCGTGG GCAGATGGCG AGTGGTTTAC CTCGCGTGAT
GCCGTTGCAG AATCTATCAA AGTTGCTGTA TTTAAAGTAA CTGGCGAAAC CAACACCGAT
GACCTTTCAC CAGCACAAGA TGCCTGGTCT CGCCCTGATA TCCCGCTACA TGCATTAGCC
ATGTACAAAA TGACCCGTGA CGGTTTAACA CCAGAAGAGC ACGGTGTTAC AGGCCCAATG
ACACAAATCA AGAGCTTACA AGACAGCGGC ATTCCAGTTG CTTTTGTTGG CGACGTTGTT
GGTACTGGTT CTTCACGTAA ATCAGCTACC AACTCGGTAT TGTGGTTCTT TGGCGACGAT
ATGCCTGGCG TACCAAACAA GCGCGGCGGC GGTATTTGTA TAGGTGGCAA AGTAGCCCCA
ATTTTCTACA ACACCATGGA AGATGCTGGC GCACTTGTGT TCGAAGCTCC AGTTGATAAT
TTGGGCATGG GCGATGTCAT TGAAATCCGC CCATACGAAG GCAAAATTCT TAACGAAGCT
GGCGAAACCA TCTCTGAGTT TGAATTGAAA TCTGACGTAT TGTTAGACGA AGTTCGCGCT
GGTGGCCGTA TTAACTTAAT TATTGGCCGT GGTTTAACCA CTCGCGCACG CGAATCTTTA
GGTTTGCCTG TGTCTGAGTT GTTCCGCGTA CCGCAATCTC CAGCAGATTC AGGTAAAGGC
TTCTCTCTAG CGCAAAAAAT GGTTGGTCGC GCATGTGGCC TAGCCGAAGG CAAAGGCGTT
CGCCCAGGCA CATACTGTGA GCCACGTATG ACCACAGTAG GCTCGCAGGA CACCACTGGC
CCAATGACGC GCGATGAGCT TAAAGACCTT GCATGTTTGG GCTTCTCTGC CGATTTAGTT
ATGCAGTCTT TCTGTCACAC TGCGGCTTAC CCTAAGCCTG TAGACATTGA CACTCAGCAC
ACCCTGCCAG ACTTTATCCA AAACCGCGGC GGTGTTTCTT TGCGCCCTGG CGACGGTATT
ATCCACTCAT GGTTAAACCG CATGTTGTTG CCAGATACCG TAGGTACGGG TGGCGATTCA
CACACTCGCT TCCCTATGGG TATTTCATTC CCTGCGGGTT CTGGCCTTGT AGCTTTCGCA
GCAGCCACCG GCGTAATGCC GTTGGATATG CCCGAGTCTG TATTGGTTCG TTTTAAAGGT
ACCCGTAAGC CAGGCATCAC TCTACGTGAC CTAGTACACG CAATTCCTTA TCAGGCAATC
AAAGATGGTT TGTTAACCGT AGAGAAAAAA GGCAAGAAGA ATATTTTCTC TGGCCGCATT
CTTGAAATTG AAGGCTTAGA CGACCTAACC GTAGAACAAG CTTTCGAGCT TTCAGATGCC
TCTGCCGAGC GCTCTGCTGC TGGCTGTACC ATTCAGCTAC CAGAAGACAA GCTTGCAGAA
TACCTGCGCT CTAACATCAC CTTGTTGCGC TGGATGATTT CTGAAGGCTA CCAAGATGTA
CGTACCCTTG AGCGCCGCGC ACAAAAGATG GAAGAGTGGC TTGCCAACCC ATCACAGCTT
AAAGCTGACG CAGACGCAGA ATACGCAGCG GTTATCGAGA TCGACCTAGA TACCATTACC
GAGCCAGTAG TTTGCTGCCC GAACGACCCA GACGATGCAC GCTTGCTATC TGAAGTTGCC
GGCGACAAAG TAGACGAAGT GTTCATTGGT TCTTGTATGA CCAACATCGG CCACTTCCGC
GCTGCCGGTA AGTTGTTAGA CGCCAACAAA GACGGCTTAA AAACCCGCTT CTGGATGTCT
CCTCCAACTA AAATGGATGA GCACACCTTA ATGGAAGAAG GCTACTACAA TATTTACGGC
CGCAATGGCG TACGTATGGA AATGCCTGGT TGCTCTTTGT GTATGGGTAA CCAAGCACGT
GTAGCCGATG GCGTTACCGT ACTTTCTACT TCTACCCGTA ACTTCCCTAA CCGTTTAGGT
AATGGCGCCA ATGTTTACTT AACTTCGGCA GAGTTGGCCG CAGTTGGCGG TATTTTGGGT
CGCTTACCCA CCCCGGCTGA GTATATGGAA TACGCTGCGA AAATCGACTC CATGTCCGAT
GAGATTTTCC GCTACATGAA CTTCGATCAA ATTGCCTCTT TCACCAAAGG TGCTGAAGAA
GGCAAGCGTA TCGCAGCGGT AGAAATTCAA GACGTTGCAA TGTAA
|
|---|
| Protein sequence | MLEAYREHVA ERAALGIPPK PLSPEQVADL VELLKNPPAG EEETLVDLIS NRVPPGVDEA
AYVKAGFLSA IAKGETTCSL ISKQDAVVLL GNMHGGYNIE TLVALLDDAE LASLAAKELK
HTLLMFDAFH DVEEKAKAGN ANAQEVMQSW ADGEWFTSRD AVAESIKVAV FKVTGETNTD
DLSPAQDAWS RPDIPLHALA MYKMTRDGLT PEEHGVTGPM TQIKSLQDSG IPVAFVGDVV
GTGSSRKSAT NSVLWFFGDD MPGVPNKRGG GICIGGKVAP IFYNTMEDAG ALVFEAPVDN
LGMGDVIEIR PYEGKILNEA GETISEFELK SDVLLDEVRA GGRINLIIGR GLTTRARESL
GLPVSELFRV PQSPADSGKG FSLAQKMVGR ACGLAEGKGV RPGTYCEPRM TTVGSQDTTG
PMTRDELKDL ACLGFSADLV MQSFCHTAAY PKPVDIDTQH TLPDFIQNRG GVSLRPGDGI
IHSWLNRMLL PDTVGTGGDS HTRFPMGISF PAGSGLVAFA AATGVMPLDM PESVLVRFKG
TRKPGITLRD LVHAIPYQAI KDGLLTVEKK GKKNIFSGRI LEIEGLDDLT VEQAFELSDA
SAERSAAGCT IQLPEDKLAE YLRSNITLLR WMISEGYQDV RTLERRAQKM EEWLANPSQL
KADADAEYAA VIEIDLDTIT EPVVCCPNDP DDARLLSEVA GDKVDEVFIG SCMTNIGHFR
AAGKLLDANK DGLKTRFWMS PPTKMDEHTL MEEGYYNIYG RNGVRMEMPG CSLCMGNQAR
VADGVTVLST STRNFPNRLG NGANVYLTSA ELAAVGGILG RLPTPAEYME YAAKIDSMSD
EIFRYMNFDQ IASFTKGAEE GKRIAAVEIQ DVAM
|
|---|
| |