| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1739 |
|---|
| Symbol | |
|---|
| ID | 3966547 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 2215131 |
|---|
| End bp | 2215742 |
|---|
| Gene Length | 612 bp |
|---|
| Protein Length | 203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637920822 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_527211 |
|---|
| Protein GI | 90021384 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2353] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.000033243 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTAC GTAAGCAAGT TAAGAAGTGG GTTGCAGGGC TAGCGGTGGT TTCAATGGCA
ACTGCGTCAT CTTCATTGGT TCAGGCTGCG CCAGAAACCT ACACTATCGA TACTAAAGGT
GCGCACGCAT TTGTTCAGTT TAGAGTTAAG CACTTAGGTT ATAGCTGGTT GTATGGTCGC
TTTAATGACT TTTCTGGTGA TTTTGTTTAC GACGCAGAAA ACCCTGCGGC GAATAAAGTG
AATGTTGTGT TGAACATGGC CAGTGTCGAT TCAGCACATG CCGAGCGCGA CAAGCATATT
CGCTCTGGTG ATTTTTTCGA GGTAGACAAG TACAAGCAGG CGACATTTGC GAGTACCTCA
TACAAGAAAA TCGATGACAG CAAAGGCATG CTTACCGGCG ATTTAACCTT ATTTGGCAAA
ACTAAATCTA TTAGCTTTGA AGTAGAGCAT GTAGGTGGTG GTGCAGACCC ATGGGGTGGT
TATCGTCAAG GTTTTGAAGG TAAGGTAGTT ATCAACCCAG CCGACTGGGG TAAAGATTTC
AGCAAAAAAC TTGGCCCCGC GCTGACTGAA GTTGAGTTAA CCCTTTCTGT TGAAGGTATT
CGTCAGAAAT AA
|
|---|
| Protein sequence | MTLRKQVKKW VAGLAVVSMA TASSSLVQAA PETYTIDTKG AHAFVQFRVK HLGYSWLYGR
FNDFSGDFVY DAENPAANKV NVVLNMASVD SAHAERDKHI RSGDFFEVDK YKQATFASTS
YKKIDDSKGM LTGDLTLFGK TKSISFEVEH VGGGADPWGG YRQGFEGKVV INPADWGKDF
SKKLGPALTE VELTLSVEGI RQK
|
|---|
| |