| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1685 |
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| Symbol | |
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| ID | 3966472 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2154121 |
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| End bp | 2154390 |
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| Gene Length | 270 bp |
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| Protein Length | 89 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637920766 |
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| Product | cold-shock DNA-binding protein family protein |
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| Protein accession | YP_527157 |
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| Protein GI | 90021330 |
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| COG category | [K] Transcription |
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| COG ID | [COG1278] Cold shock proteins |
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| TIGRFAM ID | [TIGR02381] cold shock domain protein CspD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000000000048024 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCCTACCG GAACCGTCAA ATGGTTTAAC AATGCTAAGG GCTTTGGGTT TATTCTACCT
GACGCCGGCG GAGAAGACCT CTTCGCACAC TACTCTTCCA TCGAAATGGA AGGTTATCGT
ACGCTAAAAG CTGGCCAACC CGTTACCTTT GAGATCGAAA AAGGTGATAA AGGTTTGCAC
GCTAAAAACA TTCAATGCAC AGACTTACCC GAAACCAGTG AGCAGCAACC TACTGTAGAG
CAATCTATAG CAGAAACCGA ACCCGGTTAA
|
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| Protein sequence | MPTGTVKWFN NAKGFGFILP DAGGEDLFAH YSSIEMEGYR TLKAGQPVTF EIEKGDKGLH
AKNIQCTDLP ETSEQQPTVE QSIAETEPG
|
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