Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1664 |
Symbol | |
ID | 3965141 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2131733 |
End bp | 2133091 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637920745 |
Product | seryl-tRNA synthetase, class IIA |
Protein accession | YP_527136 |
Protein GI | 90021309 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1115] Na+/alanine symporter |
TIGRFAM ID | [TIGR00835] amino acid carrier protein |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0197857 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAACTGT TATTGTCTGT GTTGAACACA GTAAGTGGCT GGGTATGGGG CGTACCCACC TTAGCGCTGA TTTTGCTGGT GGGTATATGG CTTACCGTCA TTATTCGCGG GGTGTCTATT ACCCGCATAC CATTTGCGTT TGTGCAGCTA ATAAGGGGGC GGTCGGCGAA TGGAGAGGGT ACGGTAGCGC CTTTTTCCGC GCTGATGATG TCGCTTTCGG CAACTATTGG TACCGGTAAT ATTGCTGGGG TGGCTACTGC CATTGGTCTA GGCGGCCCTG GGGCGTTGTT TTGGATGTGG TGCAGCGCGC TGTTTGGCAT GGCAACAAAA TATGCCGAGG CCGTGTGTGC GGTGCACTAT CGCGAAAAAA ACGCTGAGGG TAAGCACGTT GGCGGCCCGA TGTATTACAT CAAAAATGGT TTAGGCAAGC GCTGGTTGTG GCTGGCTGCC TGCTTTGCAT TTTTTGGCTC GATTGCAGGC TTTGGTATCG GCAACATGGT GCAGGCTAAC TCGGTGGCAG ATTCGCTCGC CGACGCATTT GGTGTGAACC GTGTAATTAC TGCATTCGTG CTTATGATTT TAGTCGGGGC GGTTATCTGG GGCGGCGTAA CTCGTATTGC AACGGTTGCT AAAAAGCTGG TGCCGTTAAT GGCGCTTTCT TATTTGGTGG CAGGGGTAAT TGTACTGGGT GCTAACTTCG CTGAAATTCC CGCTGCAATT GCTTTAGTGT TTAAAAGTGC TTTTAGCCCA GTGGCGGCGC AAGGTGGTTT TGCAGGTGCC GCTGTTGCGC TGGCTATTGA AAAAGGTATT GCGCGCGGTG TGTTTTCTAA CGAAGCCGGC TTAGGTAGTG CACCTATTGC ACACGCGGCA GCGGCAACTG ATAGCCCGGT GCGTCAAGGC ACAATTGCTA TGTTAGGTAC TTTTATCGAT ACGTTGATTG TGTGCTCAAT TACAGGGCTG GCGATAATTG TTAGCGGTGT ATGGGCAGGC ACAGAGCAGG GGGCGGCAAT GTCACAGGCT GCGTTTAACA GTGTATTGCC ATACGGCGAC AAAATTGTCT CTGTGGCGTT GGTATTGTTT GCTTTCACCA CAATAATAGG GTGGAGCTAC TACGGCGAGC GCTGCGTAGA ATATTTGTTT GGGCGGGGCG CCATACGTGT TTTCCGTTAC GCTTGGGTTA TGGCTATTCC GGTTGGGGTT ATGCTTAAGC TTGAAGTGGT TTGGATCATT GCGGATATTC TAAACGGGTT AATGGCACTG CCAAACTTAG TCGCCCTGTT GTTGCTTTCT GGGGTGGTAG CAAAACTCAC GCGTGAATTT TACGCGTCTA ATAAAGTTGA AAAGGCTGCG GATAAATAA
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Protein sequence | MELLLSVLNT VSGWVWGVPT LALILLVGIW LTVIIRGVSI TRIPFAFVQL IRGRSANGEG TVAPFSALMM SLSATIGTGN IAGVATAIGL GGPGALFWMW CSALFGMATK YAEAVCAVHY REKNAEGKHV GGPMYYIKNG LGKRWLWLAA CFAFFGSIAG FGIGNMVQAN SVADSLADAF GVNRVITAFV LMILVGAVIW GGVTRIATVA KKLVPLMALS YLVAGVIVLG ANFAEIPAAI ALVFKSAFSP VAAQGGFAGA AVALAIEKGI ARGVFSNEAG LGSAPIAHAA AATDSPVRQG TIAMLGTFID TLIVCSITGL AIIVSGVWAG TEQGAAMSQA AFNSVLPYGD KIVSVALVLF AFTTIIGWSY YGERCVEYLF GRGAIRVFRY AWVMAIPVGV MLKLEVVWII ADILNGLMAL PNLVALLLLS GVVAKLTREF YASNKVEKAA DK
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