| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1651 |
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| Symbol | |
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| ID | 3965167 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | - |
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| Start bp | 2119485 |
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| End bp | 2120129 |
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| Gene Length | 645 bp |
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| Protein Length | 214 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637920732 |
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| Product | ribosomal large subunit pseudouridine synthase A |
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| Protein accession | YP_527123 |
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| Protein GI | 90021296 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 52 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAACCA ACCTAGCACC GGCTCAATTC GAATTACTGC ATTGCGACGA AGATATAGTT
GTAGTGAATA AGCCTACCGA CCTGCTCTCT GTGCCTGGGC TTGCATCGCC ACAGAACCTA
TTTGATAGGG TAAAAGCGCA GTTTCCTACA GCGTTAGTGG TGCACCGTTT AGATATGGCC
ACCTCGGGCT TAATGATTTT TGCCCTAAAT AAACCCGCGC AATCGCACTT AGGTAAACAA
TTCGAGCGCC GTACCATAAA AAAAATGTAT GTTGCAGTGG TGCATGGGTT AGTTGAGCAG
CAATCTGGTG AGATAAGCTC GCCACTTATC TGTGATTGGG AGAACCGCCC CAAACAGAAA
GTAGACTGGC TACATGGCAA GCCAGCACTT ACCCAATATA GCGTTGTAGA CCGCAACACA
GCCATGCAAG CTACGCGGGT ACACCTATTC CCCCATACGG GTCGATCCCA CCAATTGCGT
GTACACATGC AGCAGATTGG CCACCCCATC ATTGGCGACT ACTTTTACGC CCCACAAGAT
GCCGACTCGT GTAATTCACG TTTGTTGCTG CATGCCCAAA CACTCAATCT TAGCCACCCT
ACCAGTGGCG CAAATATTCA CTTTGACTGC CCCGCACCAT TTTAA
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| Protein sequence | MQTNLAPAQF ELLHCDEDIV VVNKPTDLLS VPGLASPQNL FDRVKAQFPT ALVVHRLDMA
TSGLMIFALN KPAQSHLGKQ FERRTIKKMY VAVVHGLVEQ QSGEISSPLI CDWENRPKQK
VDWLHGKPAL TQYSVVDRNT AMQATRVHLF PHTGRSHQLR VHMQQIGHPI IGDYFYAPQD
ADSCNSRLLL HAQTLNLSHP TSGANIHFDC PAPF
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