Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1650 |
Symbol | |
ID | 3965166 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 2116547 |
End bp | 2119291 |
Gene Length | 2745 bp |
Protein Length | 914 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637920731 |
Product | pseudouridine synthase, Rsu |
Protein accession | YP_527122 |
Protein GI | 90021295 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCGGCAC TCACTCGTCC CAAATTTGGT GCACACACCA AACTGTTCCA CGCTATAAAG CATGCGTTAA CCCCCGTTAT ATTTTTAGGT GCTGCTGCTT TCCCACTTGC CGCTCACAGC CAATACAACA TGGAAAACCT CGACCGCGGG TTGGTGGCCA TAGATCGCAA AGACGGCAGC GTATTAGTAA GCTGGCGCTG GTTGGGGCAA GAGCCAGATA ACACCAGCTT CAACGTATAT AGAAACGGCA CACTATTAAC CAGCTCCCCC CTTACCAATA AAACAAACTT TGTAGATACC AGCGGCAACC CAAACGCTAA TTACGCGGTA GAAGCCATAG TAAACGGCGC GAGCCAATCA CTAGCCACCA CACATGTATG GAGCGATATA TACCGCACTA TTCCGCTGCA AAGACCACCA GGTGGCACCA CCCCCGACGG AGTGGCATAC ACCTATAGCC CCAACGATAT AAGCGCAGCC GATTTAGACG GCGATGGCGG TTACGAGCTA ATCGTAAAAT GGGACCCCTC CAACGCAAAA GACAACTCGC AAAGTGGCTA CACCGGCAAT GTGTATCTCG ACGCTTACGA AATATCTGGC GAGTTTATGT GGCGCATAGA CCTAGGCCGC AATATTCGAG CAGGCGCCCA CTACACGCAA TTTTTAGCAT TCGATTTTGA TAGCGATGGC AAAGCAGAAG TTGCAGTTAA AACCGCAGAC GCCACCAAAG ACAGCCAAGG AGTAGTAATA GGAGACAGCA ATGCCGATTA CCGCAACAGT GCAGGCTATG TTTTATCTGG CCCCGAATAC CTCACCATGT TTGAAGGCCA AACCGGTAGA GCGCTAAATA CCGTTAACTA CGTACCCGCG CGCGGCAGTG TTTCTAGCTG GGGCGACAAC TACGGCAACC GTGTTGATAG ATTTTTAGGT GGCGTAGCCT ACTTAGATGG CCAAAACCCA AGTTTGATTA TGTCGCGCGG GTACTACACC CGCACCGTGG TAGCAGCATG GGACTGGCGC AATGGGCAGC TTAGCCAACG CTGGGTATTT GATTCCAACA CCAGTGGCAA CAGCAGCTAT GCAGGCCAAG GCGCGCACAG CCTTACCATT GGCGATGTAG ATGCAGACGG AAAACAAGAA ATTGTATTTG GCGCCATGAC CATAGATGAC AACGGCACCG GCTTGAACAA TACCCGCCTA GGTCACGGCG ATGCACTGCA CCTATCCGAC ATGGACCCAA GCAACCCAGG CTTAGAAGTG TTTATGGTGC ACGAATGCCC CTCTTGCTAT GGCGAGCACG GAATAGAAAT GCACGATGCC GCCACCGGCC AAATACTATG GAGCCACCCA GGCGACTACA TAGACATAGG CCGAGGTGTA GCCATGGATA TAGACCCACG TTATGCCGGC TACGAAGCTT GGGCTTCGCG CGGTGGTTTA TACAGTGCAA AAGGCGAAAC AATATCGAGC ACGCGCCCGT CGCAAATAAA CTTTGCCGCT TGGTGGGATG GCGACTTACT GCGCGAAATA CTCGATAACA ATTACATAAA CAAATGGAAC TACACCGCCA GCTCTACCAC GCGCTTGCTA AGCGCAGGTA ACTACGGTGC AGCATCGAAC AACGGCACCA AGGCTACACC AGGGCTTTCG GCCGATATTC TTGGTGACTG GCGCGAAGAA GTGGTATGGC GCAACAGCAA CAACCAAGAA CTTATGGTGT TTACCACCCC ACACGAAAGT GAATACCGCT TAAGAACCCT AATGCACGAC CCGCAATACC GCACAGCCAT AGCTTGGCAA AACGTGGGCT ACAACCAACC ACCTCACCCC TCTTACTTTT TGGGTGCGGG TATGACTACC CCCAACCAAC CACACATAAC CATAGTTGGC GAAGGCACAG TGCAGCCTCC AGCCCCTACA GGCGACGCAA TACAAGAAAA CGCCACCGGC TTTTGCGGCT ACGAAGGCAC TATAGATAGC AACCACTCTG GCTATACAGG CGCGGGCTTT ACTAACACTA CCAACGCAAC AGGTGCAGGC ATTAACTGGA ACCTACATGC GTCCACCGCC GGTACATACC GCCTAAGCAT GCGTTACGCG AATGGCAGTA CGGCACGAGG TGCTGTGCTA AACGTAGAAA CAACCGGTAA TAGCTACCCC ATGGCATTTG CACCAACAAG CACATGGACA AACTGGCAAG AAGAATATGT AGACGCCCAC CTAAACGCCG GCTACAACAG CATTCGGCTT GAAGCAAACC AAGCGGCAGG TTTGCCCAAC CTCGATGCCA TCTACCTAGC CGATGGTCTT ACGGCGGCAG CGTGCGGCCA AACATCTAGC AGCAGCTCGT CCTCCAGTAG CTCCTCTAGT TCTTCCAGCA GCTCTTCAAG CTCTAGTAGC AGTTCCAGTA GTAGCTCGAG CAGCAGCTCA TCCGGCGGTA CAACAGCAGG CCTAGCTTGC GCCAACGGCA GTACAGATAC ATGGGGAACG GGGTTTGTGT TAAACGGCTT CCAAGTAGAA AACGAAGGCC AGCAAGCCAC CAATAACTGG CAAGTGACAC TTCAATTCGA CCAGCCCGTA AACATAACCA ACGCATGGGG TGTAAACGTA GAAACAACAG GCACAACCGT TGTAGCAACA AGCGTAGGCT ACAACAGCCA CCTAAACCCG GGGCAAAGTG CTAGCTTTGG AATGCAAGGA ACATCGGCAA CGGCGGTAAG CAACCCGCTA TGCAGTGCCC AGTAA
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Protein sequence | MSALTRPKFG AHTKLFHAIK HALTPVIFLG AAAFPLAAHS QYNMENLDRG LVAIDRKDGS VLVSWRWLGQ EPDNTSFNVY RNGTLLTSSP LTNKTNFVDT SGNPNANYAV EAIVNGASQS LATTHVWSDI YRTIPLQRPP GGTTPDGVAY TYSPNDISAA DLDGDGGYEL IVKWDPSNAK DNSQSGYTGN VYLDAYEISG EFMWRIDLGR NIRAGAHYTQ FLAFDFDSDG KAEVAVKTAD ATKDSQGVVI GDSNADYRNS AGYVLSGPEY LTMFEGQTGR ALNTVNYVPA RGSVSSWGDN YGNRVDRFLG GVAYLDGQNP SLIMSRGYYT RTVVAAWDWR NGQLSQRWVF DSNTSGNSSY AGQGAHSLTI GDVDADGKQE IVFGAMTIDD NGTGLNNTRL GHGDALHLSD MDPSNPGLEV FMVHECPSCY GEHGIEMHDA ATGQILWSHP GDYIDIGRGV AMDIDPRYAG YEAWASRGGL YSAKGETISS TRPSQINFAA WWDGDLLREI LDNNYINKWN YTASSTTRLL SAGNYGAASN NGTKATPGLS ADILGDWREE VVWRNSNNQE LMVFTTPHES EYRLRTLMHD PQYRTAIAWQ NVGYNQPPHP SYFLGAGMTT PNQPHITIVG EGTVQPPAPT GDAIQENATG FCGYEGTIDS NHSGYTGAGF TNTTNATGAG INWNLHASTA GTYRLSMRYA NGSTARGAVL NVETTGNSYP MAFAPTSTWT NWQEEYVDAH LNAGYNSIRL EANQAAGLPN LDAIYLADGL TAAACGQTSS SSSSSSSSSS SSSSSSSSSS SSSSSSSSSS SGGTTAGLAC ANGSTDTWGT GFVLNGFQVE NEGQQATNNW QVTLQFDQPV NITNAWGVNV ETTGTTVVAT SVGYNSHLNP GQSASFGMQG TSATAVSNPL CSAQ
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