Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1622 |
Symbol | |
ID | 3965177 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 2086468 |
End bp | 2087457 |
Gene Length | 990 bp |
Protein Length | 329 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637920705 |
Product | putative peptidase |
Protein accession | YP_527096 |
Protein GI | 90021269 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 0.270373 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTATTTA GAAACAGGCC CAGCACCACA GGCGTAGACC CAAATGATGA GCACCGCGAT TTTAAGCTTT TAGAGGCGGT GGTTGTAGAT GCGTTTGCAG AGCAAAAAAA GGCGCGTCGT TGGGGTATAG TATTTAAAAC GCTTACATTC GCGTATTTGT TTGTTGTTTT AATGTTGTTT GTGGCAGGCG CACAGCAATC GGGGGTGGTG AATGTGACAG AAGATCACAC GGCAGTAGTA ATGGTGCGCG GTGCTATTGC GGGCGATAAA GAAGCGTCTG CCCCCAGAAT AAATGCGGCG CTAAGAGCAG CGTTTGAAAA TGAGCATGCA AAAGCTATTG TGCTAGCTGT AAATTCCCCT GGTGGTAGCC CTGTGCAGTC GGCGTATGTG TACGACGAAA TTATGCGCCT TAAAAAAGAA TACCCAGATA AAAAAGTGTA TGCGGTAATA GAAGATATTG GCGCCTCGGG TGCGTACTAT ATTTCTGCTG CCGCGGATGA GATTTATGCC AACCGTTCTA GTTTGGTGGG GTCTATTGGT GTAATTGCCT CCGGCTTTGG CTTTACTGGC ACCATGGAGA AGCTTGGCGT AGAGCGCAGG GTATATACCT CCGGCGAAAA TAAAGCGTTT CTCGATCCGT TTTCCCCAGC CAATGAACAG CATGAAGAGT TTTGGGAAGG CGTGCTCGCA GAAGTGCATG TGCAGTTTAT GGATGCGGTA AAAGCAGGGC GCGGCGACCG ATTAAAAGAT AATGATACCG TTTTTAGCGG CTTAATATGG AATGGCGAGC GCGCGTTAGA AATGGGGTTG ATTGATGGCT TGGGCAGTGC TCGCGACGTG GCGCGAGATG TAATCAAACA TGAAAAACTG GTTGATTACA CCCGCCGTAA ATCGCCATTG CAAGAATTAA TGAATAGCTT TGGTGTGTCT GTCGGTGAGG GTATTGCCCG CTCCGTTGGT GTTGATAACT CTATTGCACC TCTGCGTTAA
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Protein sequence | MLFRNRPSTT GVDPNDEHRD FKLLEAVVVD AFAEQKKARR WGIVFKTLTF AYLFVVLMLF VAGAQQSGVV NVTEDHTAVV MVRGAIAGDK EASAPRINAA LRAAFENEHA KAIVLAVNSP GGSPVQSAYV YDEIMRLKKE YPDKKVYAVI EDIGASGAYY ISAAADEIYA NRSSLVGSIG VIASGFGFTG TMEKLGVERR VYTSGENKAF LDPFSPANEQ HEEFWEGVLA EVHVQFMDAV KAGRGDRLKD NDTVFSGLIW NGERALEMGL IDGLGSARDV ARDVIKHEKL VDYTRRKSPL QELMNSFGVS VGEGIARSVG VDNSIAPLR
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