Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1616 |
Symbol | |
ID | 3965723 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | - |
Start bp | 2077692 |
End bp | 2078789 |
Gene Length | 1098 bp |
Protein Length | 365 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 637920698 |
Product | tRNA (uracil-5-)-methyltransferase |
Protein accession | YP_527090 |
Protein GI | 90021263 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR02143] tRNA (uracil-5-)-methyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.150904 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.902349 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACAACTA AACTAGGCCA AGCCAACCCC GCGAATTATC AGCAGCAGCT GGACGACAAA GAAAAGGCGA CCAAAGAGCA ATTCAGCGAT TTTTGGCAAG GCGACATAGA AGTACACCCT TCCCCCCCCA GCCACTACCG AATGCGCGCA GAATTCAAAA TGTGGCAACA AGGCGCCGAA GCCTTCTACG CCATGTATCA ACCTGGCGAG TATAAAAAGC CTGTCACATT GGAGTGGGAA TTTAGCGTAG GCGCAGAAAA AATTGTCGAG CTAATGCCAA AGTTACTCGA AATTGTAAAC GCCTCCGAGC TGTTGCGTAA GCGCCTGTTT CAAGTGGAAT TTTTAACCAC TACAACCGGT GAAAGCGTTA CTACTCTTAT TTACCACAAA CCATTAACTG AAGAATGGCA AGCAGAAGCC AACGCACTTG CTAGCAGCCT AAACACACAT ATTATTGGAC GCAGCAAAAA GCAAAAAATT GTTTTGACAC AAGATTACGT CGAAGAAACC CTTACCATTA GCGGTACGCC ATTTACGTAC AAACAGATTG AGTCTGGGTT TACCCAGCCA AACGCAGCCG TATGTCAAAA AATGCTGCAA TGGGCAGTAG ATGCCACCGC AAACCTGGGT GGCGACCTAG TAGAACTGTA CTGTGGTAAC GGCAACTTCA CACTACCACT AAGTAAAAAC TTCGACAAAG TACTTGCCAC AGAAGTATCT AAAACTTCTG TAAAGGCCGC TGAATACAAT ATAGAAAAAA ACGGCTGTAA AAATATCACC ATTGCAAGAA TGTCGAGTGA AGAATTTACC GAAGCATTAA ATGGCGTGCG AGAATTTAGA CGATTAAAAG ATATAGAATT AGACAGCTAT AATTTTAGCA CCGTGTTTGT AGACCCCCCT AGAGCGGGGC TAGATGAAGA TACTGAAGCG CTAATTAGCC GGTTCGACAA TATTATTTAT ATTTCGTGCA ACCCCGACAC ACTCGCCAAC AATCTTGCCA ACCTCTGCAA AACGCACAAA GTTGAACGCT TTGCGTTATT CGATCAATTC CCTTATACCG ATCATCGCGA ATGCGGTGTA ATACTTACCA AAAAATAA
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Protein sequence | MTTKLGQANP ANYQQQLDDK EKATKEQFSD FWQGDIEVHP SPPSHYRMRA EFKMWQQGAE AFYAMYQPGE YKKPVTLEWE FSVGAEKIVE LMPKLLEIVN ASELLRKRLF QVEFLTTTTG ESVTTLIYHK PLTEEWQAEA NALASSLNTH IIGRSKKQKI VLTQDYVEET LTISGTPFTY KQIESGFTQP NAAVCQKMLQ WAVDATANLG GDLVELYCGN GNFTLPLSKN FDKVLATEVS KTSVKAAEYN IEKNGCKNIT IARMSSEEFT EALNGVREFR RLKDIELDSY NFSTVFVDPP RAGLDEDTEA LISRFDNIIY ISCNPDTLAN NLANLCKTHK VERFALFDQF PYTDHRECGV ILTKK
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