Gene Sde_1609 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1609 
SymbolclpX 
ID3965716 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2068121 
End bp2069416 
Gene Length1296 bp 
Protein Length431 aa 
Translation table11 
GC content46% 
IMG OID637920691 
ProductATP-dependent protease ATP-binding subunit ClpX 
Protein accessionYP_527083 
Protein GI90021256 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1219] ATP-dependent protease Clp, ATPase subunit 
TIGRFAM ID[TIGR00382] endopeptidase Clp ATP-binding regulatory subunit (clpX) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000000000578423 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGACC ATACTGGTGA CAACGAAGAC AACGGCAAGC TACTTTATTG CTCATTTTGC 
GGCAAGAGTC AGCATGAGGT GCGCAAGCTT ATTGCGGGGC CGTCTGTGTT CATATGTGAT
GAATGTGTTG ATTTGTGTAA CGACATCATT CGCGAAGAGA TACAAGAGAG TACAACGGAG
TCGACTGGCG ATAAACTGCC AACTCCACAA GAGATTTCTG AAACTTTAGA CGAATATGTG
ATTGGCCAGA AGCAGGCCAA AAAGGTATTG GCCGTAGCGG TATACAACCA CTACAAGCGG
CTGCGCGTTG GAGACAAGAA AAAGTCCAAA GACGATGTTG AGCTAGGAAA AAGTAATATT
TTGCTAGTGG GGCCTACCGG TAGCGGTAAA ACGCTATTAG CGGAAACTCT AGCTCGCCTA
TTGAATGTAC CTTTCACTAT CGCTGATGCA ACCACATTAA CCGAAGCGGG TTATGTGGGT
GAAGATGTAG AAAACATCAT TCAAAAACTG TTGCAGAAGT GCGATTACGA TGTTGAAAAA
GCGCAGCAGG GCATAGTCTA TATCGATGAA ATCGATAAGA TTTCAAGAAA GTCCGACAAC
CCATCGATAA CGCGCGACGT GTCGGGTGAG GGTGTTCAGC AGGCATTACT CAAGTTAATC
GAGGGTACTG TAGCGTCTGT GCCTCCTCAG GGTGGGCGTA AGCATCCGCA GCAAGAGTTT
TTACAGGTAG ATACCGGTAA CATCTTGTTT ATCTGTGGTG GTGCATTTGC TGGCCTAGAT
AAGGTTATTC GCGATCGTTC CGAAAAAGGC GGTATTGGGT TTAGTGCCGA GGTTAAGAGC
AAAGATTCAG GCAAAAATGT AGGTGAAACC CTGCGTGAGC TAGAGCCGGA AGATTTGGTT
CGCTACGGGC TTATTCCAGA GTTTGTTGGC CGCTTGCCGG TTATCGCTAC CTTGGACGAG
CTAGATCAAG ATGCCCTTGT ACGCATTCTT AAAGAACCTA AAAACTCCCT TGTTAAGCAA
TATAGCAAGT TGTTTGAAAT GGAAGGCTCT GAGGTAGATT TTAGGGATGA CGCCCTAGAA
GCCGTTGCCA ACAAGGCTAT GGAGCGTAAA ACCGGTGCTC GTGGCTTGCG TTCAATTATG
GAAAACGTAC TGTTAGATAC TATGTACAAG ATTCCTTCCG AGGAAAACGT AGTAAAAGTT
GTTGTTGATG AGTCCGTTAT TAAAGGTGAA TCTGCTCCAT TATTGGTTTA CGGCAATAAC
GATGCCGAAA CCGCTAAGGC TGTACCTGAG GAATGA
 
Protein sequence
MSDHTGDNED NGKLLYCSFC GKSQHEVRKL IAGPSVFICD ECVDLCNDII REEIQESTTE 
STGDKLPTPQ EISETLDEYV IGQKQAKKVL AVAVYNHYKR LRVGDKKKSK DDVELGKSNI
LLVGPTGSGK TLLAETLARL LNVPFTIADA TTLTEAGYVG EDVENIIQKL LQKCDYDVEK
AQQGIVYIDE IDKISRKSDN PSITRDVSGE GVQQALLKLI EGTVASVPPQ GGRKHPQQEF
LQVDTGNILF ICGGAFAGLD KVIRDRSEKG GIGFSAEVKS KDSGKNVGET LRELEPEDLV
RYGLIPEFVG RLPVIATLDE LDQDALVRIL KEPKNSLVKQ YSKLFEMEGS EVDFRDDALE
AVANKAMERK TGARGLRSIM ENVLLDTMYK IPSEENVVKV VVDESVIKGE SAPLLVYGNN
DAETAKAVPE E