Gene Sde_1605 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1605 
SymbolfadB 
ID3965672 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp2061835 
End bp2064000 
Gene Length2166 bp 
Protein Length721 aa 
Translation table11 
GC content47% 
IMG OID637920686 
Productmultifunctional fatty acid oxidation complex subunit alpha 
Protein accessionYP_527079 
Protein GI90021252 
COG category[I] Lipid transport and metabolism 
COG ID[COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase 
TIGRFAM ID[TIGR02437] fatty oxidation complex, alpha subunit FadB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value4.36351e-07 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAATTTG AAGGTCAGGC AATACGGCTT ACACCGCTAG ATAATGGCTG TGTAGAGCTC 
AACTTTGACT TGCAGGGTGA GTCGGTTAAT AAGTTTGGTC AAACTGTGTT TAAAGATCTT
GCCGAGGTGC TCGATCTCCT TGAATCCGCT AAAGATGTAA AAGGGGTGTT GGTTACTAGC
GCCAAGAGTG TGTTTTTTGT GGGCGCAGAC ATAAACGAAT TTGGCCCCAT CTTCGCCAAG
GGTGAAGAGG CCATTATCGA AGGGGTAAGC AGTGTTAATA AGCTGTTTAG CCGGTTCGAA
GACTTGCCAT TCCCTTCGGT AGTGGCAATT AATGGCTATG CCTTAGGCGG TGGTTTAGAG
TTTTGTTTGG CGTGCGATTA CCGTGTAATG AGCACTGCCG CTAAAATAGG CTTGCCCGAA
ACCAAGTTGG GTATTATTCC TGGTTGGGGT GGTACTGTGC GCTTGTCTCG TGTTGCGGGT
GTCGACGTGG CAGTGGAATG GATTGCCGGC GGCACCGAAA ACAGACCAGA TGCTGCATTA
AAAGCAGGCG TAGTAGATGG TATTGTAGAA CCTGAAAACC TGCGCGACGC CGCTTTAAAA
GTGCTTGCCG ATGCTGTTGC TGGTGATCTA GAAATTACTC AGCGCAGAGC TAAGAAAAAA
GGCCCCTTAA AACATAACGA TATTGAAAGC CTCCTCGCTT TTGAATCTTC CAAGGCCTTT
GTTAAAGCAA AAGCTGGTCG CAACTACCCA GCCCCAATCG CCGCAATTGA ATCTATGCAA
CATGGTGCCA AGCTAGGGCG CGATGAGGCT ATTCCTGTAG AGACTAAGCT GTTTGCGAAA
ATGGCGCTTA CTAGTGTGGC AGAATCGTTA ATAGGTTTAT TCCAAAGCGA TCAGCTATTA
GGTAAAAAAG CTAAAAATTG GGAAAAGCAA TCAGACAAAA AAGTAGAGCA TGCAGCCGTA
TTGGGCGCGG GCATTATGGG TGGTGGTATA GCTTATCAGT CTGCCTACCG TGGCGTGCCC
ATTAAAATGA AAGACATTGC CGCAGCGGGT GTGGAGCTGG GCTTAAAAGA AGCCACCAAG
CTTCTTGCGA AGCGCGTCGA TAGGGGGCGC ATGACCAACC TAGAAATGGG GCAAGTACTA
AGCCGCATTG ATGGAACTTT AAGCTACGAC AATTTTGACG ATGTAGATGT AGTGGTGGAA
GCTGTTGTTG AAAACCCAAA GGTGAAGCGC GCAGTTTTGG CTGAAGTGGA AGACAAAATA
AGCACCGATG CTATTTTGTG TTCAAACACT TCTACTATTT CTATCTCTTA TTTAGGTGAA
GCATTAAAGC GGCCAGAAAA TTTCTGCGGA ATGCACTTTT TTAACCCAGT GCACGCCATG
CCGTTAGTTG AAGTTATTCG CGGTGCTAAA ACCTCTGATA GAGCAATAGC AAGAACAGTG
GCCTATGCCA ATGCATTAGG TAAAAAAGCA ATTGTTGTTA ACGATTGCCC TGGCTTTTTA
GTCAACCGAG TATTGTTCCC TTATTTTGCT GGATTCGCGA TGTTGCTGCG CGATGGAGCA
GATTTTCAGC AAGTAGATAA AGTCATGGAG CGCTGGGGGT GGCCAATGGG CCCGGCTTAC
CTTATGGATG TTGTGGGTAT TGATACTGGT GTACATGCCG AATCCGTAAT GGCTGAGGGG
TTTCCAGATC GTATGGCAAA AACCTTTAAA GCTGCGTCTG ATATTTTGTT TGAATCTGGC
CGCTTAGGGC AGAAGAGCGA CTTAGGTTTT TACGCGTATA AAGAAGATAA AAAAGGTAAG
CCGCAAAAAG TAATGGCGGA AGACACTTAC GAGTTGCTTA AACCTCACTG CGCAGAACGC
AAAGAGTTTA GCGACGAGGA AATTATTGCG CGCATGATGG TGCCAATGGC AACTGAACTT
GCGCGCTGCT TGGAAGAGGG GGTTGTGAGC AGTGCCGCTG AAGCTGATAT GGCGCTTATT
TACGGCTTAG GTTTCCCTCC ATTCCGTGGT GGTGTATTCC GTTGGATAGA CAGCATTGGT
ATTCAAGCGT TTATCGATAT GGCTGCGCCG CTGGCCGATT TAGGGTTGGT TTACGTTCCA
ACTGATGGAA TGAAAGCCCT AGCCGCAAAA AATGCAAAAT ATTACAACCA GACCCAAGGA
GCCTAA
 
Protein sequence
MKFEGQAIRL TPLDNGCVEL NFDLQGESVN KFGQTVFKDL AEVLDLLESA KDVKGVLVTS 
AKSVFFVGAD INEFGPIFAK GEEAIIEGVS SVNKLFSRFE DLPFPSVVAI NGYALGGGLE
FCLACDYRVM STAAKIGLPE TKLGIIPGWG GTVRLSRVAG VDVAVEWIAG GTENRPDAAL
KAGVVDGIVE PENLRDAALK VLADAVAGDL EITQRRAKKK GPLKHNDIES LLAFESSKAF
VKAKAGRNYP APIAAIESMQ HGAKLGRDEA IPVETKLFAK MALTSVAESL IGLFQSDQLL
GKKAKNWEKQ SDKKVEHAAV LGAGIMGGGI AYQSAYRGVP IKMKDIAAAG VELGLKEATK
LLAKRVDRGR MTNLEMGQVL SRIDGTLSYD NFDDVDVVVE AVVENPKVKR AVLAEVEDKI
STDAILCSNT STISISYLGE ALKRPENFCG MHFFNPVHAM PLVEVIRGAK TSDRAIARTV
AYANALGKKA IVVNDCPGFL VNRVLFPYFA GFAMLLRDGA DFQQVDKVME RWGWPMGPAY
LMDVVGIDTG VHAESVMAEG FPDRMAKTFK AASDILFESG RLGQKSDLGF YAYKEDKKGK
PQKVMAEDTY ELLKPHCAER KEFSDEEIIA RMMVPMATEL ARCLEEGVVS SAAEADMALI
YGLGFPPFRG GVFRWIDSIG IQAFIDMAAP LADLGLVYVP TDGMKALAAK NAKYYNQTQG
A