| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1592 |
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| Symbol | |
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| ID | 3965659 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 2046241 |
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| End bp | 2048712 |
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| Gene Length | 2472 bp |
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| Protein Length | 823 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637920673 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_527066 |
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| Protein GI | 90021239 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000214692 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCCAT CAACCCCTAA AAAGAGCTTT CGTACTCAAA TAGGACGTGT GCTGTTAATT
TCCCTCGGTT TGTCGTTGGG CGTGTTGTTT GTGAGTGTGT ATTACTTGGG TGTTGCGCAG
CAGCAAAAAT GGATGGAGCG GGATATCGCG GTGTTGGCTG ATATTCTTGG CAATAGGTCG
GTTGCAGCTT TAGATTTTTA CGATCAAGAC GCGGCTAAAC GTAACCTAGT ATCCAGTAGC
TTTCACCCAG CCATAGATTT CGCGTGTTTA TATAACCGCA GCGGTGAATT GTTTGCATAC
TTTAGTCGCA CCAATTCTGG TATTTCTGGT ATTTGTAGTT TGCCGCAAAT TACCGACCGA
CTGCAGCTAA ACAGTTCACT AGGTTTAGGT AAATTAAAAG CCGGCACCAA AATTGTAGAA
AACGCCAAAA ACGATCAGAT ATACGTTTAC TCCTCAGTTA CGTCCGTGGG CGATGTGGTG
GGTGAGCTGG TTATTGTTGC TAATACTAAG CTTCTTAAAA CCGGTCAGCG CGAGTTGCTG
CTTATCCTTC TAGTGTTATT TGTTGTTGTT ATGATCTCTG CGCTGCTTGT TTCACGGCGA
ATGCTAAGTA GTGCGTTATC CCCGCTTACA CATTTACACA ACACCGCAAA AAACATTTCG
GTTAACTCGC TATCACGAGA GCGGGTTAAA AAAATTAGCG ATGACGAAGT TGGCGAGCTT
GTGGATGTGT TTAACGCCAT GCTTAACAAT TTAGCTAAAG AGAACGAAGC GTTAGTGGTG
TCCGAAAGCC GATTTAGAAC GTTAGCGGAA AGCGCCCCTA TTGGTATTTT TCTTCGCAAT
GAGAATTTTG AAACCCTGTA TGTAAATGAT CGTTGGTGTG CTATTACTGG CCAGCCGCAT
GGTTGCAGCA GGCAGGAATA TCTAAAATCC ATAAGCGACT ACGACCTGCG TAACTACGAG
GGCATGATAG AAGGACTGCG CAGTGGCAGC GTAGGGCAAA CAATAGAGTA TCGTTACCGC
GCCCCGGGGC GTTTGAACGA TCATATTTTA ATGGAGTACG TAACGCCCCT TGAAGTTAAA
GAAGGTGTTT CTGGCGAGCA TCAAGTGCGT GGTTATGTAG GCTCGGTACT TGATGTTACC
GAATTGAAAA ACGCGCAGCA CGAACTTGAA AAACTGGCGT ACTATGACCC GTTAACGCAT
TTACCCAACC GCCGCTATTT TAAAGATTAC CTCGTTAAAC AATTGCAGCT GGCCAAGGAG
GAAGACTCCA TTATGGCTGT GCTGTTGGTT GACCTGGATA ACTTCAAGCG TATAAACGAT
ACGCTGGGTC ACGACGCCGG CGACATTTTG CTTTCAGTAT TGGCTGGTCG TATTAAGCAG
CGTTTGCACT CGCAAGATTT GGTTGCAAGG ATGGGCGGCG ATGAATTTTA TTTGGTGTTG
CGCAACTTAT CTTCACTGGC AGAAGTAGAA AAAATTACGA AGCGAGTAAG ATCTGTACTA
GCCAGTCCTA TTCGTATTAA AAACCATTTT GTAGAAATTA CGGCCTCAAT TGGTGTGGCG
AGTTACCCAG AAAATTGCGA TACCCCCGAA GAGCTTATGC GTAATGCCGA TATCGCACTC
TATAAAGCGA AAGGCGACGG TCGAAATAGA GTGGCTTACT TTTCTGCTGA GTTAGATAGC
CAATTGCGCG ATAAAATGCG GTTAGAGTCG AAGTTGCGTC AAGCGGTTAG CTGCGAAGCC
TTCGAAATTT ATATTCAACC GCAATACGAT TATAAAACGT CTAAATTTCG TTGGGCAGAA
GTACTTATTC GTTGGGAAGA CCCAGAAGAG GGTTTTATTC CACCGGATAA GTTTATAAAG
CTTGCCGAAG AAACTGGCAT TATTAACGAC ATTGACCAGT GGGTGTTGCG CGCTACCTGT
AAGCTGTGGG CAGAGCATGG TGAAGCGTTG CGCGCTATTG GTATAGAAGG GGTATCTATG
AACCTTTCTG CTCGCCAGTT TTATTCGAAA ACTCTGTTCG CTTACGTCGA GGCGGTATTT
GAAGAGTACG GCATTAACCC AAGTTGTATC TCGTTTGAAA TTACTGAATC TATGGTAATT
GAAAACATTG AAGGCGCCAT TGAAACGATG GAGCGGTTGC GCAACATCGG CTCACGTATT
TCTATAGATG ATTTTGGTAC GGGTTACTCG TCGCTTTCTT ACTTGAAACG TTTGCCAATT
GATAGCCTAA AAATAGACCG CTCCTTCATT ATGGATATCC CCGGTGACAC AAATGATGTT
GCCATTACCT CTGCTATTAT CGCAATGGCA GAAAAGCTTA ACCTTTCGGT TATTGCTGAA
GGTATAGAAA CCAAAGAGCA GTGCGAATTC CTTGTCGAAC AGGGCTGCTT CCATATGCAG
GGTTATTACT TCGCCAAGCC TGCGCCTGTG CGCACCTTCC TAAAACCTCA GCTAAACGCT
GCAGTAGAGT AA
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| Protein sequence | MTPSTPKKSF RTQIGRVLLI SLGLSLGVLF VSVYYLGVAQ QQKWMERDIA VLADILGNRS
VAALDFYDQD AAKRNLVSSS FHPAIDFACL YNRSGELFAY FSRTNSGISG ICSLPQITDR
LQLNSSLGLG KLKAGTKIVE NAKNDQIYVY SSVTSVGDVV GELVIVANTK LLKTGQRELL
LILLVLFVVV MISALLVSRR MLSSALSPLT HLHNTAKNIS VNSLSRERVK KISDDEVGEL
VDVFNAMLNN LAKENEALVV SESRFRTLAE SAPIGIFLRN ENFETLYVND RWCAITGQPH
GCSRQEYLKS ISDYDLRNYE GMIEGLRSGS VGQTIEYRYR APGRLNDHIL MEYVTPLEVK
EGVSGEHQVR GYVGSVLDVT ELKNAQHELE KLAYYDPLTH LPNRRYFKDY LVKQLQLAKE
EDSIMAVLLV DLDNFKRIND TLGHDAGDIL LSVLAGRIKQ RLHSQDLVAR MGGDEFYLVL
RNLSSLAEVE KITKRVRSVL ASPIRIKNHF VEITASIGVA SYPENCDTPE ELMRNADIAL
YKAKGDGRNR VAYFSAELDS QLRDKMRLES KLRQAVSCEA FEIYIQPQYD YKTSKFRWAE
VLIRWEDPEE GFIPPDKFIK LAEETGIIND IDQWVLRATC KLWAEHGEAL RAIGIEGVSM
NLSARQFYSK TLFAYVEAVF EEYGINPSCI SFEITESMVI ENIEGAIETM ERLRNIGSRI
SIDDFGTGYS SLSYLKRLPI DSLKIDRSFI MDIPGDTNDV AITSAIIAMA EKLNLSVIAE
GIETKEQCEF LVEQGCFHMQ GYYFAKPAPV RTFLKPQLNA AVE
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