| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1536 |
|---|
| Symbol | |
|---|
| ID | 3965064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1980897 |
|---|
| End bp | 1983590 |
|---|
| Gene Length | 2694 bp |
|---|
| Protein Length | 897 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 637920614 |
|---|
| Product | fibronectin, type III |
|---|
| Protein accession | YP_527010 |
|---|
| Protein GI | 90021183 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0542] ATPases with chaperone activity, ATP-binding subunit |
|---|
| TIGRFAM ID | [TIGR03345] type VI secretion ATPase, ClpV1 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCTAC TCGATAATTT AAAGGAAATG ACAATGGAAT TTGAAAAGTT AGTTAAAAAC
CTATCGAATG AAAGCAAAGA GCTATTCGAG AAATCTATTG CGTTGGCGTC TTCGCGCTCG
CACTTTTATA TTGATGTTGA GCACTGGCTT ACCGAAGCTC TTGCAGAGGA ACAGCGTGAA
ATAATAGCGA TATTGAAACA CTTTAACGTC GATGTGGATC GCGTGCATGC GGATTTGGAT
TTGGCGCTAG AGAACACAAA AACAGGGAAT GATGGGTTTC CTAAAATATC GCCAGACATT
GTGCGGCTAT TGTTTGAAGC TTGGATGATC GCTTCCAGTC AGTATGCGTC TGTGCAGGTT
TTACCCGTGC ATATATTGTT GGCGCTAGTA GATAGTGCTG GTCTTAAAAC AAAAATTGGT
AAAATATCTA AACAATTCGA GGCTATTAGT GGTGAAGAAA TTCGCACTCA GTGCGAAACC
TTGTTGCGCG GTGAAGCGCT GCAAGACCAG GGTGAAGCTA CTAACAAAAA ATTAACTAAA
ACACCCAGCT TAGATCAGTT CACAACAAAC CTTACTCAGC AAGCCAAGGA TGGGAAAATA
GACTCAATTC TTGGGCGTGA TGACGAAATA AGACAGATCA TCGATGTACT GTGCAGAAGA
AAACAGAACA ACCCCATTTT AACGGGGGAG GCTGGTGTTG GTAAAACAGC TGTTGTAGAA
GGTTTGGCCG TTAAAATTGC GCAGGGGGAT GTTCCCACTG CGATAGAAAA TGTAGAAATT
AGAAGTTTAG ATTTAGGCTT ACTACAAGCA GGGGCTGGAG TAAAGGGCGA GTTCGAAAAC
AGGCTTAAGA ATGTAATTAA AGAGGTACAG CAGTCTGTAC AGTCCATAAT TTTGTTTATC
GATGAGGCTC ATACACTTAT TGGTGCGGGC AATCAGGCCG GTAGCGGAGA TGCTGCCAAT
CTATTAAAGC CTGCTTTGGC GCGCGGTGAG TTGCGCACAA TAGCAGCAAC TACCTGGGCC
GAGTACAAAA AGTATTTTGA ATCAGATGCC GCACTTACTC GGCGCTTTCA GGTTGTGAAA
GTAGAGGAGC CGAGTGTAGA TAAAGCCATT ATTATGCTTC GCAATGCTGC TCCAACCTTA
GAGCAACATC ACAAGGTAGT AATACTTGAC GCCGCGGTTA GCGCTTCGGT TAATTTATCC
CACCGCTACA TTCCTGGTCG TCAACTACCT GATAAGTGTG TAAGCCTACT CGATACCGCC
TGCGCGCGTG TAAATCTTAG TCAAAACACC ACGCCTGCTC GAATTGTTCA ATATTCACAG
GAAATAAAAA ACATTGAGTT TGAAATTGAG CGGTTAAATC AAGAAGCTGA AAAAGGTTAC
GAGCACTCAG CGAGTATTGT TGAACTTGAA GTTAAAAAGG TAGGTATTAC CGAGCGCTAC
CAAAGCCTAT GCGCGAGATG GGAACAAGAA AAGCAGATAA TTAATCAAAT TAATAGTGCG
CGTGAAAAGG CTGAGGAAAA AGTACAGGAT TCTGATAATG AAGAAAGTGC GACTGATTTA
ACAAATACGT TAATAGCAGA GTTGCGCGTC AAATTAAAAA GTATTTCTGG TAGTCAGCCT
CTAATTTATG AATGCGTAGA TGAGCAGGTT GTAGCAGAGG TTGTAGCTGA CTGGACAGGA
ATACCCGTTG GCCGTATGCA AAGTGACGAG ATTCAAAATG TATTGTCGCT AGAGCAAACA
ATGGAAAAAC GTGTGATTGG GCAGAGTCAC GGCTTAAAGC TTATTTCTAA AGCTGTTCAA
ACTGCAAGAG CGAAACTAAG TGACCCTAAG CGGCCATTAG GCGTATTTAT GTTGGTTGGC
CCAAGTGGTG TGGGTAAAAC AGAAACGGCA CTAACCTTAG CTGAACAGTT ATACGGATCA
GAACAAAATA TGACCGTCAT TAACATGTCA GAATTTAAAG AGGAGCATAA GGTATCTATG
CTTATGGGGT CGCCCCCCGG TTATGTTGGA TATGGCGAGG GTGGCGTGCT TACCGAAGCC
GTCAGACGCA AGCCCTATAG TGTTGTGCTA TTAGACGAAA TGGAAAAGGC GCATCCAGGC
GTACAAGATA TTTTTTATCA GGTTTTTGAT AAGGGTATTT TGCGAGACGG CGAAGGTAGA
GATATAGATT TTAAAAATAC TGTAATAATA ATGACAAGTA ATACAGCCAG CGCTCAAATA
GAACAACTGT GCATCGACCC CGAAACTAAG CCCGAGCCAA AAGCATTGCT TGAAGCAATA
GAGGGTACCT TGCGTGAAAC ATATAAACCT GCCTTTTTGG GGCGTATCAA TTTGATTCCA
TACTACCCGC TAGATGAGCA GTGTTTATCT GAAATTGCGG TAATGCAATT ACATGCTATT
CAGCAACGAG TGGAAACTAA TTATAAAGTT GAGCTGAATT ATTCAGATAA ACTTGTTGAG
CATGTTGTGT CATTGTGTGC GCAATCCGAC ACTGGAGCAC GAAAAATATC TGCCTTGTTA
AATAACACTT TGCTGCCAGT GTTGGCAGAG AAAATACTTA CCGAGATAGC ATTGGATAAG
GCTTTGGAGT CTGTTGAGGT AGATGTAAGC GAAGAAGGGG AATTTGTTGT TAAAATAAAT
TCAAAAAAAG AAAATACAGA CGACATGAAA ATTAAAAAAA CGGTAACTGG ATAA
|
|---|
| Protein sequence | MTLLDNLKEM TMEFEKLVKN LSNESKELFE KSIALASSRS HFYIDVEHWL TEALAEEQRE
IIAILKHFNV DVDRVHADLD LALENTKTGN DGFPKISPDI VRLLFEAWMI ASSQYASVQV
LPVHILLALV DSAGLKTKIG KISKQFEAIS GEEIRTQCET LLRGEALQDQ GEATNKKLTK
TPSLDQFTTN LTQQAKDGKI DSILGRDDEI RQIIDVLCRR KQNNPILTGE AGVGKTAVVE
GLAVKIAQGD VPTAIENVEI RSLDLGLLQA GAGVKGEFEN RLKNVIKEVQ QSVQSIILFI
DEAHTLIGAG NQAGSGDAAN LLKPALARGE LRTIAATTWA EYKKYFESDA ALTRRFQVVK
VEEPSVDKAI IMLRNAAPTL EQHHKVVILD AAVSASVNLS HRYIPGRQLP DKCVSLLDTA
CARVNLSQNT TPARIVQYSQ EIKNIEFEIE RLNQEAEKGY EHSASIVELE VKKVGITERY
QSLCARWEQE KQIINQINSA REKAEEKVQD SDNEESATDL TNTLIAELRV KLKSISGSQP
LIYECVDEQV VAEVVADWTG IPVGRMQSDE IQNVLSLEQT MEKRVIGQSH GLKLISKAVQ
TARAKLSDPK RPLGVFMLVG PSGVGKTETA LTLAEQLYGS EQNMTVINMS EFKEEHKVSM
LMGSPPGYVG YGEGGVLTEA VRRKPYSVVL LDEMEKAHPG VQDIFYQVFD KGILRDGEGR
DIDFKNTVII MTSNTASAQI EQLCIDPETK PEPKALLEAI EGTLRETYKP AFLGRINLIP
YYPLDEQCLS EIAVMQLHAI QQRVETNYKV ELNYSDKLVE HVVSLCAQSD TGARKISALL
NNTLLPVLAE KILTEIALDK ALESVEVDVS EEGEFVVKIN SKKENTDDMK IKKTVTG
|
|---|
| |