| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1508 |
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| Symbol | |
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| ID | 3965036 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Saccharophagus degradans 2-40 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007912 |
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| Strand | + |
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| Start bp | 1944846 |
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| End bp | 1947722 |
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| Gene Length | 2877 bp |
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| Protein Length | 958 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637920586 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_526982 |
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| Protein GI | 90021155 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
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| TIGRFAM ID | [TIGR01782] TonB-dependent receptor |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.00000651564 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000000259897 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGACTAATA AATATACAAT CGGTGCATTC GCACTTTCCG CTTTCACCCT GGCTTTTAAT
CAAGCCGTTT ATGCTCAAGA AGATGCTGCT TTGGAAGAAG TGGTTGTAAC TGGTATTCGT
GCCAGCTTGG AAGCTGCAGT TGATGCTAAG CGCAACGACG GTCGAATTGT TGACTCTGTT
GTAGCTGAAG ACATTGGTAA ATTACCCGAT AACAATGTTG CAGAAGCATT ACAGCGTGTT
ACTGGTGTTT CTATTAACCG CGATTTCGGC GTGGGCTCTG AGGTTTCTAT TCGCGGCTTA
CCGCAGAACC GTGTTGAAAT TAATGGTCGC TCAAGTGTGG GCGATGGTCG CTCTGGGGTT
AGTTTTGATG ATTTCCCAGC CAGCTTTTTG CAAGCGGTAG AGGTTGTTAA GTCTCCTACA
CCAGAAATGA TTGAAGGTGC GTTGGGCGGT ACTATCAGCC TTAAAACAGC TCGCCCATTA
GATTTAAAAG AACGCGTAAT TGCTGTTTCT TTAGACGCAG AATACGCAGA TAAAGCCGAT
AACTGGGCTC CTATATTTAG TGGTTCTTTT GGCAACAACT GGGACTTTGG TGACGCAGGT
AGCTTTGGTG TAATGGCTAG CGTTGCCTAT CAAGATCGTT GGTTGCGTCA AGATACTGCT
TCCGCAAGTC TTTTCCCTTC GGATAAGTGG AGCGCCGGTG TAATTGGGCT AGAAGATACT
CCTGCTCAGA ATACGCCTAG CGGCTTGTAT ATTGTGCCAG ATGAGCACAA ATTTGAGCCC
TTCACTGAGC AACGCGAGCG TACTGCATTT AACGTTTCCA TGCAGTGGGC CCCAGCATCA
GAGCAAGGTT CATTCTATAT AGATTTAAAT AGTACTGAGC GGGATGGTGG TCAAGAAGCG
TATTCTATTC TGTCGGTAAT TGGTGCGCCC ACAGCAACAG CAAATACGAC TGAAGATGCA
AACGGACAGT TAAATAACTA CGTATTGGCG GGTTCACTAC CTATCCCCAA AACTTGGAGT
CAGTTCCGTT TTACAGAGAG TTTTTCTAAC GCAATTGGTG GTGAGTGGAA CTTCACTGAC
AGCTTAAAAG TATCCGGTGA GTACGCCGTA GCTGAATCCG ATACTATGAC GTTAGCTTCG
GAAATGAATT TGCGTGCGGT AGACCCCGTT GCTGAGGCGG CAAACCCTGC AGATGCGAAT
CAGTGGTATA CCGACGTAAC CATCATTAAC AGTCAAGACC AGATGCCAAC AGTCGATTAC
TTGGCGGACG GTACCTACAC TGACGCGAGT CACTTGGCGT TCCGTGAATA TCGTCACCGT
GAACTCCCAG TTCAAAACAA AGAATCAGCA ATGCGCCTAG ATGTAGAGTA CTCTGAGCCA
TTCGGTTTGG AATGGTTTTC AGCGCTTAAA ACGGGTGTGC GCTTCACCGA TCGTGAGTAT
GAAAAAGGTG AGTCTCAGAT ACAGATCAAA GATATTTACA AAAACCTTAC CCGTGATGGC
AACCCAGATA TTATTTGGTT GAACGATCTG GATAATGTAA AAACTTTTGA CTTTGATGAT
GCGTTTGAGC ACGCCGGAGT TCAAGGTGTT AACGATCTGA CAAGCTTTAC AGTGTATGAC
GCAGCAGCTT TACGTAACCC TGGCCAAACG TATGAAATGG TGCAGAACTT GTTAGCCGGC
ACCAATCTGG CGTTGACTGG AACTCTGCGA GAGAATTTAG ATAACGGCGA GTTAAAGGGT
TCTTATTCAC TTATTGAAGA AGATACATCT GCGTTTTACG TTCAAGGTAA CTTCGACTTT
GATCACGCGC GCATCATTGT TGGTGGTCGA TATGTGAAAA GTGAAATCAC TTCTACTGCA
TACAACCAAG AAGGTGACGC TCTTGTAACT GATGGCAATA CTTACAGCGA TTTCTTGCCT
AGCTTGAACG TAACTGTAGA TTTAACAGAA GATACACTCC TTCGCTTTGG CGGTGCTAAA
GTAATGAGCC GTCCGAACTT TGGAGAGCTG AGCCCAACGT TTGTATTTAA CTCGGATAAA
GTGACTGCAA CTCGAGGTAA CCCACAGTTA GACCCATATC GTGCAACGCA ATTTGATATG
GCGGTAGAGC ACTATTTTGG TACCGGTAAT ATGGTATCGG CCACAGTGTT TTATAAGGAT
GTTGCATCTT TCCTAAGTGA AACAATTTAC TGTGCGTACG ATGCTGATGC TGTTGCTACA
CAGAACACTA CTATCTTTGA CAATATTTGT CTGCGAGATG ACGCCACTAG CGATAAGCAA
CAATTAGTGT TTGCTGATAG TCAAGCGGTG TTTGATGCTG CTCTAGCTCA AGGTCGCAAT
GGTGTTCGTA CTACTACCAA CACAAATGGC GAAAGTGGCT ATGTACGTGG TTACGAGTTA
GGTTACCAGC AAGCCTTCGA CTTTTTGCCT GGCATCTGGT CTGGTTTAGG TGTGAATGCA
AACTACACGT ATGCGGATAG TGAGCAGCCA GGTGGTACTC CGTTAGAGGA TATCTCTGAA
AACACCTACA ATACTCAGGT GTACTGGGAA TACGAAGACT TTGCAGTTCG TTTGGCTTAT
ACCTACCGTG ATAAGTTCTT GGACGGTATT GTTCACAAGC GTGTTGAACG TGTTGGTGCG
CAGGTTTTAC CCTCAGCAAC TCGCTCTACC GATCCTACTT TGGGTAACGA CTACCGAGAT
GGTCTGTCTC AGTTAGATTT ATCTGCAAGC TGGGATGTTA CTGATAGTAT TACTCTTGTT
GCGAACGTAA GTAACTTAAC TGGTGAGCCA ACTATTAACC AGGCGGTAAC TGGTACCACG
TTCCAATTAC AAGAGTCTGA TCGTCGCTTC TCTTTCGGCG TTCGCGCTAA GTTCTAA
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| Protein sequence | MTNKYTIGAF ALSAFTLAFN QAVYAQEDAA LEEVVVTGIR ASLEAAVDAK RNDGRIVDSV
VAEDIGKLPD NNVAEALQRV TGVSINRDFG VGSEVSIRGL PQNRVEINGR SSVGDGRSGV
SFDDFPASFL QAVEVVKSPT PEMIEGALGG TISLKTARPL DLKERVIAVS LDAEYADKAD
NWAPIFSGSF GNNWDFGDAG SFGVMASVAY QDRWLRQDTA SASLFPSDKW SAGVIGLEDT
PAQNTPSGLY IVPDEHKFEP FTEQRERTAF NVSMQWAPAS EQGSFYIDLN STERDGGQEA
YSILSVIGAP TATANTTEDA NGQLNNYVLA GSLPIPKTWS QFRFTESFSN AIGGEWNFTD
SLKVSGEYAV AESDTMTLAS EMNLRAVDPV AEAANPADAN QWYTDVTIIN SQDQMPTVDY
LADGTYTDAS HLAFREYRHR ELPVQNKESA MRLDVEYSEP FGLEWFSALK TGVRFTDREY
EKGESQIQIK DIYKNLTRDG NPDIIWLNDL DNVKTFDFDD AFEHAGVQGV NDLTSFTVYD
AAALRNPGQT YEMVQNLLAG TNLALTGTLR ENLDNGELKG SYSLIEEDTS AFYVQGNFDF
DHARIIVGGR YVKSEITSTA YNQEGDALVT DGNTYSDFLP SLNVTVDLTE DTLLRFGGAK
VMSRPNFGEL SPTFVFNSDK VTATRGNPQL DPYRATQFDM AVEHYFGTGN MVSATVFYKD
VASFLSETIY CAYDADAVAT QNTTIFDNIC LRDDATSDKQ QLVFADSQAV FDAALAQGRN
GVRTTTNTNG ESGYVRGYEL GYQQAFDFLP GIWSGLGVNA NYTYADSEQP GGTPLEDISE
NTYNTQVYWE YEDFAVRLAY TYRDKFLDGI VHKRVERVGA QVLPSATRST DPTLGNDYRD
GLSQLDLSAS WDVTDSITLV ANVSNLTGEP TINQAVTGTT FQLQESDRRF SFGVRAKF
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