Gene Sde_1486 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1486 
Symbol 
ID3965223 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand- 
Start bp1912338 
End bp1913333 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content50% 
IMG OID637920563 
ProducttRNA-dihydrouridine synthase A 
Protein accessionYP_526960 
Protein GI90021133 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0042] tRNA-dihydrouridine synthase 
TIGRFAM ID[TIGR00742] tRNA dihydrouridine synthase A 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.000000000110774 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.294797 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATTCTG ACAAAACACC TACAACGTTC GACAGCCACC GCTTTTGCCT TGCTCCGATG 
ATGGACTGGT CAGACAAACA CTGCCGCTAC TTTTGGCGCC AATTAACTAA AAAATCGCGC 
CTTTATACCG AGATGGTTGT TACTGGCGCC ATTATTCACG GCGACCGCGA ACGTTTTTTA 
CAATTCAATA ACGCCGAGCA CCCCATTGCA CTGCAAGTGG GTGGCAGCGA CCCCGCCGCA 
TTGGCCCAAT GCGCGCGTAT AGCGCAGGAT TGGGGCTACG ACGAAATTAA CCTTAATTGC 
GGCTGCCCTA GCGACCGCGT ACAAAATGGC ATGATTGGCG CCATTTTGAT GTCTAAACCC 
GAACTCGTTG CCGAGTGCAT AGACGCCATG CAAAAGGCCT GTGATATTCC AGTAACCGTC 
AAACACCGCA TTGGTATTGA CGATATGGAA GATTACGAAG CGCTTAGCAA CTTTGTAACA 
ACCGTTGCCC AAACGGGCTG TAACACCTTT ATAGTGCATG CCCGCAAAGC GTGGCTAAAA 
GGGTTAAGCC CCAAAGAGAA CCGCGAGATT CCCCCGCTGC GCTACGATTT AGTAGTGCAA 
CTTAAAAAGG CTTTCCCACA CTTAAACATT GTTATAAACG GCGGCATTAA CTGTTTAGAG 
CAAGCCAAAA CCCTTTTAAA CGACCTCGAT GGCGTAATGA TTGGCCGCGA GGCGTACCAC 
AACCCCTTCT TTTTGGCGGA TGTAGACCAA AAGCTATTTG GTACCCCTAA CCCCAGCGCC 
AATCGCCACG AAGTGTTAGA TAAATTTATT CACTACGCCG AACAGCAAAA CGCCGCCGGT 
ACGCGCTTAC ACCATATGTC GCGTCACATT TTGGGCTTAT ATTTAGGCCA AAAAGGCGCT 
AGGGCGTTTC GCCGTCATAT CACTATTCAC GCAGCTAACC GCGAAGCGAG CGCTGTGGTG 
CTGCGAGAAG CCAAACAATT GGTAGATATA GGCTAA
 
Protein sequence
MNSDKTPTTF DSHRFCLAPM MDWSDKHCRY FWRQLTKKSR LYTEMVVTGA IIHGDRERFL 
QFNNAEHPIA LQVGGSDPAA LAQCARIAQD WGYDEINLNC GCPSDRVQNG MIGAILMSKP 
ELVAECIDAM QKACDIPVTV KHRIGIDDME DYEALSNFVT TVAQTGCNTF IVHARKAWLK 
GLSPKENREI PPLRYDLVVQ LKKAFPHLNI VINGGINCLE QAKTLLNDLD GVMIGREAYH 
NPFFLADVDQ KLFGTPNPSA NRHEVLDKFI HYAEQQNAAG TRLHHMSRHI LGLYLGQKGA 
RAFRRHITIH AANREASAVV LREAKQLVDI G