| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1421 |
|---|
| Symbol | |
|---|
| ID | 3966099 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | - |
|---|
| Start bp | 1838804 |
|---|
| End bp | 1840531 |
|---|
| Gene Length | 1728 bp |
|---|
| Protein Length | 575 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637920498 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_526895 |
|---|
| Protein GI | 90021068 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00000284545 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAACT TAGACACAAA ATTCCCCAAA CGCGCCTTAA GCGTATTAAT GGCTTCTGCT
ACAACACTTG CTTTAATAGG CTGTGGAGGA ACTGGGCAAG ACGACCAAAC GCCTTCTACT
TCGTCTACGC AGTTTTCTGG GGTTGCTATC GACGGCGCGC TTGCCCGAGC GACGGTATAT
TTAGACTCCA ACAACAATGC CACGCGCGAC CCGTGGGAGG ACTATGCTTT TACCGATAAT
GATGGCTACT ACTCTTACAA CCCTAAAACA AATACAGATT ACTGTGCTAG CTCTGCGCCT
GCTAGCGAAA AAATATACTG CCTCAAATCG TCTCGATCAT TCTCCAACGT GGTTGTCCGC
GTCGACGGTG GCTACGACCT ACTTACCGGC GAGCCCTTTT TGGGGCAGAT GAGCCGCAGA
ATAGAGCTAG AAGAATCAAC AAGCTCTGTG GATAGTGTTG TCTCCCCGCT TACAACGTTG
ATGACAAATG TTGAGAGTAA CGATGATAGA AGTAACGTAT TAAATGCACT GAGGATTAGC
GAAAATGATT TAGATGTTAA TTATTTAGAC TCCGATGGTA CGGGCAGTGT AAATTCTAGC
TTGCTAAACA CGGCGCTTAA GGTGCATAAA ACAGTTACAG TTTTATCTGA CCGATTGAAT
GACAATTACG AAGAGTTGAA TAATGAAGTA GGCACAATGA ACGACCCAAG CTCTGAGGTT
TACCGCAGCT TAGCACAAGA GCTTACTGCC AATTCCGACA CAGGGTTAGA CAATATTCTG
CGAGATACAC AAGCTTTAAC ACGCATTATG GATAACTCTG AGAGCGTACT ACGGGACTTG
TACGAACAAA AGGAATTGGA TTTACCTGCA GATCTCGGGT CCTCCGAATC GCCCGATCAG
TTTACTCGAG TGGTGAACAT TACAAGCAAC ATACCCAATA TTGTAAACAG ACTAATAGAC
CCTATTAGCA CGATCGATAC TGGCGGCGCT CAGGGCCGCG CAAGAGCATT AGAAACGTTT
GTGATTAAAA GCGTAAACGA AGGGCGCAAC GACGACTCGT CTATCGACAA CGCGGTTAAT
TTTTTCACGA ATGAAGCTAA TACCACATTA GTTGATGCGT TAACATCTGC TTTATCGGGT
GAACGAGGGG ATCTTTCAGC GCTTTTAAAC AACGATTTTA GCGGAAGTGA TTTCGATAGC
GAAGAGGAGA TAAATCAAGC ATCGCGATTA GATGATAGCG CTCAACCCCT ATCGCTATTA
GCTGGTAGCA CCTTAAAAGT ATCAGATTTA GATTTAGGCA GCGCTCCCAA CGACCTAAAA
GATGCGGAAG TTGAATTTTA CTTTACGGGT GACACAGATG CCATTTCTGG TCAGTTTACA
TCCTGCGTAA AATTCATAGA CGGTGCGAGT ACCGATGGCA CACTAGGCGA AGGCAATAGC
CGCGGTGAGT TAGTGAACGG TTACTGGAGT ATGCTCGGAG CCAGTTCTGA CAACCGTTCT
TCATTTTCCG TACTGCTTAC CATCGAGTTC TTAGGCGCTA CATATCAAGC CATTCTTAAA
CCCAATGGAA CCGCAACAAT CGCCAACACC GAATATGAAC GAATTCGTTT TGATTTTGAT
GGTGAAATTA AAAATTGGTA CAGCGTAGAC GGATTAACCA CAACAGAGAT TGTACCTACG
TCGAATAAGG ATTGCGAAAC ACGCCTACCT TCGCGCGTAG GCATCTAA
|
|---|
| Protein sequence | MKNLDTKFPK RALSVLMASA TTLALIGCGG TGQDDQTPST SSTQFSGVAI DGALARATVY
LDSNNNATRD PWEDYAFTDN DGYYSYNPKT NTDYCASSAP ASEKIYCLKS SRSFSNVVVR
VDGGYDLLTG EPFLGQMSRR IELEESTSSV DSVVSPLTTL MTNVESNDDR SNVLNALRIS
ENDLDVNYLD SDGTGSVNSS LLNTALKVHK TVTVLSDRLN DNYEELNNEV GTMNDPSSEV
YRSLAQELTA NSDTGLDNIL RDTQALTRIM DNSESVLRDL YEQKELDLPA DLGSSESPDQ
FTRVVNITSN IPNIVNRLID PISTIDTGGA QGRARALETF VIKSVNEGRN DDSSIDNAVN
FFTNEANTTL VDALTSALSG ERGDLSALLN NDFSGSDFDS EEEINQASRL DDSAQPLSLL
AGSTLKVSDL DLGSAPNDLK DAEVEFYFTG DTDAISGQFT SCVKFIDGAS TDGTLGEGNS
RGELVNGYWS MLGASSDNRS SFSVLLTIEF LGATYQAILK PNGTATIANT EYERIRFDFD
GEIKNWYSVD GLTTTEIVPT SNKDCETRLP SRVGI
|
|---|
| |