Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1416 |
Symbol | |
ID | 3968706 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1834752 |
End bp | 1836071 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637920493 |
Product | Iron-regulated ABC transporter permease protein SufD |
Protein accession | YP_526890 |
Protein GI | 90021063 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0719] ABC-type transport system involved in Fe-S cluster assembly, permease component |
TIGRFAM ID | [TIGR01981] FeS assembly protein SufD, group 1 |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.199083 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAGATT TTATAGCAAA CGCTGCGGCC ATAGCTGCTT CACCGCTTAC ATGGTTGCAA GATAAAACAC AGCAAGGTAA ACAAGCTTGG CTTGGTCACC GTTTTCCTAC CCGTAAAACG GAAAACTGGA AGTACACCAA TTTGCGTGCG CTAGAGCAGG GCGATTACTT GCGCGCAGCC AATATTGGGG CGGCGCCAGA AGCGTTGCCG CAGCATTTAA CCATTGCCGG TTTAGAGGCT GTTAAACTTG TTTTCGTGAA TGGCCAATTT GTTGCCAGTT TATCCGACGA TTTAGCGCGC GCCAATGTTG CGGGTTTAGA GTTAACGCTA TTTTCCAATG CTAGCGATGC GCAGAAAAAA GCCATTAACG AACAGCTTGG GCAGCTAGTT AATAGTACTA AATATGAATT TTCTGGTTTG AACACGGCGC AACTTAACGA CGGCGTGTAT ATCAATGTGG CTAAAAACCA ACAAGTGGCT AAGCCTATCC ACATTGTTTG GATGACCACT GCGCAAGACT CTGCCTTTAC TGTGCCGCAC CGCTTATTGG TAAACCTAGA AACAGGTGCA AGCGCCTGCG TTATCGAGCA GTTTGTAAGT GGCGACGAAG CCCAAAATAG CTTTACCCAT AGTGTTTCTG AATTTAACGT AGGCGAAAAT GCGCGCTTAC AGCACTACCG TTTGCAGCAA GAGCAAGAAG ATGCCATTCA TATTGGTGGC GTGTTTGTGC GCTTAGATCG CTCTGCAGAC TTAGACAGTT TTCATATGGC GTTTGGCAGC AAAATTAAAC GCGTAGATAT TGAAGTGCAG CATCAAGGTG AAGGCTCTAC CTCTAAAATT AATGGGGTGT ATTTGCCAAA AAACAATCAG CATATTGATT ATCACACCTG CATAGAACAC GCCGTGCCTC ACTGTACTTC ACAAGAAACT TTTCGCGGAA TTATTGCCGA TAGCGCGCAC GCGGTATTTA ACGGGCGCAT TCATATTCAT CCAGATGCGC AAAAAACGCT GGCTGAATTA AGCAATAAAA ACTTGTTAAC CAGTGATAAA GCACAAATAG ATACCAAGCC CGAGCTTGAG ATTTATGCCG ACGATGTGCG CTGTGCACAC GGTGCCACCA TTGCGCAGCT GGATGAGAAA TCTCTTAATT ATTTGCGCAC GCGTGGCATT TCGCTCGACG AAGCACAAGT AATGCTTAGC TATGGTTTTA TTAACGAATT AATTAACGAT GTTGCGTTAG AGCCAATTGG TACTTATTTG CGTCCCATTT TGGCCAATCG TTTCGCCAAA GAACCGTCGT TAGTGAGGCA CATTGCATGA
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Protein sequence | MSDFIANAAA IAASPLTWLQ DKTQQGKQAW LGHRFPTRKT ENWKYTNLRA LEQGDYLRAA NIGAAPEALP QHLTIAGLEA VKLVFVNGQF VASLSDDLAR ANVAGLELTL FSNASDAQKK AINEQLGQLV NSTKYEFSGL NTAQLNDGVY INVAKNQQVA KPIHIVWMTT AQDSAFTVPH RLLVNLETGA SACVIEQFVS GDEAQNSFTH SVSEFNVGEN ARLQHYRLQQ EQEDAIHIGG VFVRLDRSAD LDSFHMAFGS KIKRVDIEVQ HQGEGSTSKI NGVYLPKNNQ HIDYHTCIEH AVPHCTSQET FRGIIADSAH AVFNGRIHIH PDAQKTLAEL SNKNLLTSDK AQIDTKPELE IYADDVRCAH GATIAQLDEK SLNYLRTRGI SLDEAQVMLS YGFINELIND VALEPIGTYL RPILANRFAK EPSLVRHIA
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