Gene Sde_1412 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1412 
Symbol 
ID3968702 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1830665 
End bp1831159 
Gene Length495 bp 
Protein Length164 aa 
Translation table11 
GC content50% 
IMG OID637920489 
ProductBadM/Rrf2 family transcriptional regulator 
Protein accessionYP_526886 
Protein GI90021059 
COG category[K] Transcription 
COG ID[COG1959] Predicted transcriptional regulator 
TIGRFAM ID[TIGR02010] iron-sulfur cluster assembly transcription factor IscR
[TIGR00738] rrf2 family protein (putative transcriptional regulator) 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value0.612266 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGACTAA CAACGAAAGG CCGATACGCC GTAACGGCGA TGCTAGATTT AGCGCTGCAT 
GCCCAGTCTG GCCCTGTCAG CTTGGCAGAT ATATCTCGTC GCCAGCAAAT ATCGCTGTCT
TATTTAGAGC AGCTGTTCGC CAAATTGCGA CAAAGTACAC TGGTAACCTC TGTGCGAGGG
CCTGGTGGCG GCTATAAGCT TAATCGCTCG GCTGCAGACG TGCACGTAGC GCAAATTATC
GATGCCGTGA ATGAAAGCGT CGATGCCACT AACTGTGGTG GGCAGGGCAA TTGTCAGCAA
GGGGAAGTGT GTTTAACCCA TTACCTTTGG AGCGACCTGA GCGATCAAAT TCACACTTTT
TTAAGTGGTA TTAGCTTGGC CGACCTATTG GCGCGGCAAG ATGTTAAATC GGTGGCGAAT
CGCCAAAACA TGCGTGAAAA AGCCGGCTTA GATGCCAAGC CCGATGACGT TATTACCACT
GCGAATATAG ATTAA
 
Protein sequence
MRLTTKGRYA VTAMLDLALH AQSGPVSLAD ISRRQQISLS YLEQLFAKLR QSTLVTSVRG 
PGGGYKLNRS AADVHVAQII DAVNESVDAT NCGGQGNCQQ GEVCLTHYLW SDLSDQIHTF
LSGISLADLL ARQDVKSVAN RQNMREKAGL DAKPDDVITT ANID