| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1408 |
|---|
| Symbol | |
|---|
| ID | 3968698 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1825152 |
|---|
| End bp | 1826105 |
|---|
| Gene Length | 954 bp |
|---|
| Protein Length | 317 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637920485 |
|---|
| Product | protein translocase subunit secF |
|---|
| Protein accession | YP_526882 |
|---|
| Protein GI | 90021055 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0341] Preprotein translocase subunit SecF |
|---|
| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR00966] protein-export membrane protein SecF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCCAG AAAAAATTCT TAACTTTATG GGGCAGCGTA AATTAGCTGC GGTGTTCTCT
ATATTATTGT TGGTTGGCTC CATTGTTTCT TTAACAGTGC AGGGGCTTAA CTTTGGCTTG
GATTTCACTG GTGGTACACA GCTGGAATAT AAGTACGAAA CAGCCGCCGA CTTGAACGCA
ATTCGAGCAA CTTTAGAAGA GGCCGGTTAT ACCGGTGCTG TAGTGGTGAA CTACGGGTCT
GACACGAATG TGTTAATGAG CCTGCAGCAA TCTGTACCTC CCAGTGCAGA TCCGTCTAAG
CCACAAGAAA TTGTTTCTAT TGGCGAAGTG GTGCTGGAAT TACTTGAAAG TAAATCTAGC
GAAGAAATAG AGCTGCTGCG CACAGATGTT GTGGGTGCAC AGGTAGGCGA AGAGTTGGCA
AATAGCGGCG GCATGGGTAT GTTGTTGGCG CTAGCGGTAG TAATGGCGTA CGTTGCGGTG
CGCTTCCAAT TTAAATTTTC TGTTGGTGCT GTGGCAGCGT TAATCCACGA TGTGATAATT
GTGCTGGGTG TGTTTTCGTT TTTTCAGCTT ACTTTCGATC TTACCGTGCT GGCGGCGGTG
CTTGCGGTAA TAGGTTACTC GCTTAACGAT ACCATTGTTG TGGCAGACCG AATTCGCGAA
AACTTCCGTT TAATTCGTAA GGGCGATTCA GAGGAGGTGA TTAACATCTC TTTAACGCAA
ACCCTTGGCC GCACAATGAT TACCTCGTTA ACCACTTTGC TAGTGTTATT GGCGCTGTTC
TTTGTGGGTG GCGAGATGAT CCACAATTTC GCCTTAGCAT TAATTGTGGG TGTTGTGATT
GGTACTTATT CGTCTATTTA TGTTTCTGCC AATATTCTAA TGGCGATGCA TATAGACCGC
GAAGATTTAA TCCCTGTTGT GAAAGAGGGT GAAGAGCTCG ACGAGCTGCC CTAA
|
|---|
| Protein sequence | MTPEKILNFM GQRKLAAVFS ILLLVGSIVS LTVQGLNFGL DFTGGTQLEY KYETAADLNA
IRATLEEAGY TGAVVVNYGS DTNVLMSLQQ SVPPSADPSK PQEIVSIGEV VLELLESKSS
EEIELLRTDV VGAQVGEELA NSGGMGMLLA LAVVMAYVAV RFQFKFSVGA VAALIHDVII
VLGVFSFFQL TFDLTVLAAV LAVIGYSLND TIVVADRIRE NFRLIRKGDS EEVINISLTQ
TLGRTMITSL TTLLVLLALF FVGGEMIHNF ALALIVGVVI GTYSSIYVSA NILMAMHIDR
EDLIPVVKEG EELDELP
|
|---|
| |