Gene Sde_1395 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSde_1395 
Symbol 
ID3968664 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSaccharophagus degradans 2-40 
KingdomBacteria 
Replicon accessionNC_007912 
Strand
Start bp1807300 
End bp1808631 
Gene Length1332 bp 
Protein Length443 aa 
Translation table11 
GC content46% 
IMG OID637920471 
Producthypothetical protein 
Protein accessionYP_526869 
Protein GI90021042 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2211] Na+/melibiose symporter and related transporters 
TIGRFAM ID[TIGR00792] sugar (Glycoside-Pentoside-Hexuronide) transporter 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00525698 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTTGTCAG TAAAAGAAAA AGTAGCATAC GGCTTGGGCG ATACAGCCAG TAACATAGTG 
TTTCAAACCG TTATGCTGTT TCTTGCCTTC TTCTATACCG ATATTTTTGG CATTTCGCCG
GCGGTGGTAG GCACCATGTT TATAGTGGTG CGGGTATTAG ATGCAATAAC CGACCCGTTA
ATGGGGGGCT TGGCAGACAG AACAAATACT AAATGGGGTA AGTTTAGGCC CTATTTACTT
TGGTTGGCCG TACCGTTCGG TTTGATAAGT GTTTTGGCAT TTACTACTCC CGAATTAGGT
GAAGATGGCA AGGTGTATTA TGCCTATGCT ACCTACGCAC TATTAATGAT GGCGTATACG
GCTATAAACA TTCCTTATTC CGCATTGGGT GGGGTGCTAA CTGCAGACCC AAAACAACGT
GTTTCGGTTC AATCTTACCG CTTTGTATTT GGCATGCTGG GCGGCCTAAT TGTTACTGCA
GCAACGCTGC CTCTTGTGCA GTTTTTTGGT AAGGGCGATA AGGCGCTTGG CTATCAGCTC
ACCATTGCGG CTATGAGTGC ACTGGGGGTA ATACTATTTT TATTGTGTTT TGCTGGTACC
AAAGAGCGTA TTGCGCCGCC GCCCCAGCAG AAAACGAGCT TGTTTAAAGA CTTATCCCTA
ATGTGGGTAA ATGACCAATG GCGAGTGCTA TGCGTAGCAG CGTTCTTTTT GCTTATTGGT
ATGGTAATGC GTTCCACTTT GGCGATTTAC TACGTTAAGT ACTATTTATT ACGCGAAGAC
CTGGTAACAG CGTTTGTTAC ATTGGGCATG ATAGGCAACA TAGTGGGTTG CGCGTTAGCC
CAGCCGCTAA GTAAGCGTGT ATGCAAGGTT AAGGCTTATA TAGCGCTGCA AATTATCGCG
GCAGTTTTGT GCGCTGCGGC ATATTTCGTG GGGCAAGCGC AGGTAGTTGC TGCTTTTGTG
CTGTATGTTT TATGGTGCTT TTTTCTACAG ATGGCCACCC CTTTACTGTG GGCAAAAATG
GCCGATACCG TCGATTATGG TCACTGGAAG ACCGGTATTC GCATAACGGG TATGGTATAT
TCCTCCGTCG TTTTTTTCAT CAAGCTTGGC CTAGCGTTAG GCGGGGCAGT AGCTAGCTGG
CTATTGGCCT ATTACGGCTA CCAAGCAGAT ACCGCCCAAA CGCCAGATAC ATTGCACGGT
ATTTTGCTGT CATTTACCGT ATTCCCAGCG GTGTTTTCTC TGCTTGTGGC TTGGGCTATG
CGTTGGTATA TCCTAAACAA CGATGAGGTG GCGCGTATTC AGCAAGCGCT AAATTTAAAA
ACTGTAAACT AA
 
Protein sequence
MLSVKEKVAY GLGDTASNIV FQTVMLFLAF FYTDIFGISP AVVGTMFIVV RVLDAITDPL 
MGGLADRTNT KWGKFRPYLL WLAVPFGLIS VLAFTTPELG EDGKVYYAYA TYALLMMAYT
AINIPYSALG GVLTADPKQR VSVQSYRFVF GMLGGLIVTA ATLPLVQFFG KGDKALGYQL
TIAAMSALGV ILFLLCFAGT KERIAPPPQQ KTSLFKDLSL MWVNDQWRVL CVAAFFLLIG
MVMRSTLAIY YVKYYLLRED LVTAFVTLGM IGNIVGCALA QPLSKRVCKV KAYIALQIIA
AVLCAAAYFV GQAQVVAAFV LYVLWCFFLQ MATPLLWAKM ADTVDYGHWK TGIRITGMVY
SSVVFFIKLG LALGGAVASW LLAYYGYQAD TAQTPDTLHG ILLSFTVFPA VFSLLVAWAM
RWYILNNDEV ARIQQALNLK TVN