Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sde_1395 |
Symbol | |
ID | 3968664 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Saccharophagus degradans 2-40 |
Kingdom | Bacteria |
Replicon accession | NC_007912 |
Strand | + |
Start bp | 1807300 |
End bp | 1808631 |
Gene Length | 1332 bp |
Protein Length | 443 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637920471 |
Product | hypothetical protein |
Protein accession | YP_526869 |
Protein GI | 90021042 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2211] Na+/melibiose symporter and related transporters |
TIGRFAM ID | [TIGR00792] sugar (Glycoside-Pentoside-Hexuronide) transporter |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00525698 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGTTGTCAG TAAAAGAAAA AGTAGCATAC GGCTTGGGCG ATACAGCCAG TAACATAGTG TTTCAAACCG TTATGCTGTT TCTTGCCTTC TTCTATACCG ATATTTTTGG CATTTCGCCG GCGGTGGTAG GCACCATGTT TATAGTGGTG CGGGTATTAG ATGCAATAAC CGACCCGTTA ATGGGGGGCT TGGCAGACAG AACAAATACT AAATGGGGTA AGTTTAGGCC CTATTTACTT TGGTTGGCCG TACCGTTCGG TTTGATAAGT GTTTTGGCAT TTACTACTCC CGAATTAGGT GAAGATGGCA AGGTGTATTA TGCCTATGCT ACCTACGCAC TATTAATGAT GGCGTATACG GCTATAAACA TTCCTTATTC CGCATTGGGT GGGGTGCTAA CTGCAGACCC AAAACAACGT GTTTCGGTTC AATCTTACCG CTTTGTATTT GGCATGCTGG GCGGCCTAAT TGTTACTGCA GCAACGCTGC CTCTTGTGCA GTTTTTTGGT AAGGGCGATA AGGCGCTTGG CTATCAGCTC ACCATTGCGG CTATGAGTGC ACTGGGGGTA ATACTATTTT TATTGTGTTT TGCTGGTACC AAAGAGCGTA TTGCGCCGCC GCCCCAGCAG AAAACGAGCT TGTTTAAAGA CTTATCCCTA ATGTGGGTAA ATGACCAATG GCGAGTGCTA TGCGTAGCAG CGTTCTTTTT GCTTATTGGT ATGGTAATGC GTTCCACTTT GGCGATTTAC TACGTTAAGT ACTATTTATT ACGCGAAGAC CTGGTAACAG CGTTTGTTAC ATTGGGCATG ATAGGCAACA TAGTGGGTTG CGCGTTAGCC CAGCCGCTAA GTAAGCGTGT ATGCAAGGTT AAGGCTTATA TAGCGCTGCA AATTATCGCG GCAGTTTTGT GCGCTGCGGC ATATTTCGTG GGGCAAGCGC AGGTAGTTGC TGCTTTTGTG CTGTATGTTT TATGGTGCTT TTTTCTACAG ATGGCCACCC CTTTACTGTG GGCAAAAATG GCCGATACCG TCGATTATGG TCACTGGAAG ACCGGTATTC GCATAACGGG TATGGTATAT TCCTCCGTCG TTTTTTTCAT CAAGCTTGGC CTAGCGTTAG GCGGGGCAGT AGCTAGCTGG CTATTGGCCT ATTACGGCTA CCAAGCAGAT ACCGCCCAAA CGCCAGATAC ATTGCACGGT ATTTTGCTGT CATTTACCGT ATTCCCAGCG GTGTTTTCTC TGCTTGTGGC TTGGGCTATG CGTTGGTATA TCCTAAACAA CGATGAGGTG GCGCGTATTC AGCAAGCGCT AAATTTAAAA ACTGTAAACT AA
|
Protein sequence | MLSVKEKVAY GLGDTASNIV FQTVMLFLAF FYTDIFGISP AVVGTMFIVV RVLDAITDPL MGGLADRTNT KWGKFRPYLL WLAVPFGLIS VLAFTTPELG EDGKVYYAYA TYALLMMAYT AINIPYSALG GVLTADPKQR VSVQSYRFVF GMLGGLIVTA ATLPLVQFFG KGDKALGYQL TIAAMSALGV ILFLLCFAGT KERIAPPPQQ KTSLFKDLSL MWVNDQWRVL CVAAFFLLIG MVMRSTLAIY YVKYYLLRED LVTAFVTLGM IGNIVGCALA QPLSKRVCKV KAYIALQIIA AVLCAAAYFV GQAQVVAAFV LYVLWCFFLQ MATPLLWAKM ADTVDYGHWK TGIRITGMVY SSVVFFIKLG LALGGAVASW LLAYYGYQAD TAQTPDTLHG ILLSFTVFPA VFSLLVAWAM RWYILNNDEV ARIQQALNLK TVN
|
| |