| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1373 |
|---|
| Symbol | |
|---|
| ID | 3965853 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1776964 |
|---|
| End bp | 1778046 |
|---|
| Gene Length | 1083 bp |
|---|
| Protein Length | 360 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637920449 |
|---|
| Product | queuine tRNA-ribosyltransferase |
|---|
| Protein accession | YP_526847 |
|---|
| Protein GI | 90021020 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0795] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATGC TCGCCGTTAG CCTTATTTTG CTACTGATAA TTATAAGTGC ACGTTTTGTA
ACCTATTTGG CCGAAGCCGC TGCTGGGGAA TTAGACGGCG GTGTGTTGCT CACGCTAATG
ACTTATCGGT TGCCTGCCTA TTTAGAGCTT ATTTTACCCT TGGGTTTGTT CTTGGGCATT
CTTATGGCCT ATGGCCGCCT TTACTTAGAA AGTGAAATGA CCGTATTGCA CGCGTGTGGT
TTAAGTCAGG GTAAGTTGAT TGGCTTTACT ATGGTCTCCA CTTTCGTCGT CGCGTGTGTG
GTGGGGGTGT TTAGCCTGTA TTTGGGGCCA GAGGGTGTAA GAGCATCTGA AAAACTGTTG
GCCGAGCAGC GCAACCGCAC CGATTTCGAA ACTTTAAAAC CCGCTCGTTT CCACGAATTA
GATGGTGGCA GCGGTATTAG CTATGCAGAA TCTATTTCTG ACGATAAGCA AAAGCTGCAA
AAAGTGTTTA TGGCTAAGCT AGCGCCCGAC AGCGTAGATG ACGACCTAAC CGTGCTAACC
GCAGAGTCTG GTGAAACGGT GGTGGATGCT GAAACCGGTG TGAAATATCT GCTGCTAAAA
AATGGGCGAC GTTATGTTGG CCGCCCGGGT GAAGTGAATT ACAAGGTTGT GGAATTCAAA
ACGTTCTCTC AGATTCTCCC CGAGCCAGAT TACGAAGCCG TAAAGCCGAA AAAAGAAACA
GACGGTTTGT CCACTGCTCA ATTATTCGAG CGAGATACAC TTGCAGCGCG CGCGGCATTG
CAGTGGCGCT TATCTTTACC TGTATTGGTG ATGGTGGTGG GGTTATTAGC TGTGCCGCTA
AGTCGTACCC AGCCAAGACA AGGGCGCTAC GCGAAAATGC TCCCGGCTAT TTTGTTGTAT
ATCTTTTATT TGGTTTGCGT GAACGGAGCT CGTGGTGCTA TTGAAGATGG CAGCGCACCG
TTTATAGGGT TGCTGTGGGT TGTGCATGGT GCGTTCTTTT GTTTGGCGCT GTTGTTAATT
GGTGGAAAAT CGATGTTTGC CGGCCTATTT CGGTCTGTAT TTAGTAAAGG AGAGGCTGCG
TGA
|
|---|
| Protein sequence | MSMLAVSLIL LLIIISARFV TYLAEAAAGE LDGGVLLTLM TYRLPAYLEL ILPLGLFLGI
LMAYGRLYLE SEMTVLHACG LSQGKLIGFT MVSTFVVACV VGVFSLYLGP EGVRASEKLL
AEQRNRTDFE TLKPARFHEL DGGSGISYAE SISDDKQKLQ KVFMAKLAPD SVDDDLTVLT
AESGETVVDA ETGVKYLLLK NGRRYVGRPG EVNYKVVEFK TFSQILPEPD YEAVKPKKET
DGLSTAQLFE RDTLAARAAL QWRLSLPVLV MVVGLLAVPL SRTQPRQGRY AKMLPAILLY
IFYLVCVNGA RGAIEDGSAP FIGLLWVVHG AFFCLALLLI GGKSMFAGLF RSVFSKGEAA
|
|---|
| |