| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sde_1335 |
|---|
| Symbol | |
|---|
| ID | 3965950 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Saccharophagus degradans 2-40 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007912 |
|---|
| Strand | + |
|---|
| Start bp | 1730631 |
|---|
| End bp | 1732703 |
|---|
| Gene Length | 2073 bp |
|---|
| Protein Length | 690 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 637920411 |
|---|
| Product | DNA polymerase III subunits gamma and tau |
|---|
| Protein accession | YP_526809 |
|---|
| Protein GI | 90020982 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2812] DNA polymerase III, gamma/tau subunits |
|---|
| TIGRFAM ID | [TIGR02397] DNA polymerase III, subunit gamma and tau |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0235479 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTATC AGGTACTTGC CCGTAAGTGG CGCCCGCGCA CTTTCCGCGA AATGATTGGC
CAAGAGCACG TTTTACGCGC GCTTATTAAC GCCCTCGATC ACGGACGTCT GCATCACGCT
TACCTGTTTA CCGGCACGCG CGGCGTGGGC AAAACCTCCA TAGCACGTAT TCTAGCTAAG
TGTTTGAATT GCGAAACTGG GGTTAGTTCC GAGCCATGTG GTGAATGCAG TGCCTGTGTG
GAAATCAGTG AGGGCCGCTT TGTCGACCTT ATCGAGGTGG ATGCGGCATC GCGCACCAAA
GTAGAAGATA CGCGCGAGCT GCTCGACAAC GTGCAATATG CACCCACGCG CGGCCGCTAC
AAAATATACC TCATCGATGA GGTGCACATG CTCTCTAACC ACAGTTTTAA CGCTTTGCTT
AAAACCTTAG AGGAGCCGCC AGAGCATGTG AAGTTTCTAC TGGCAACCAC AGACCCGCAA
AAACTGCCGG TAACTATATT ATCTCGATGT TTACAGTTTA ATCTCAAAAA TATGAGCCCC
GAGCGCATAG TGGGCCATTT GTCGCATATT TTAGAAAAAG AAGTTATCCC CTTTGAGGAG
TCTGCCCTGT GGCAGTTGGC GCGCTCGGCA GATGGCAGTA TGCGCGATGC ACTAAGCTTA
ACCGACCAAA GTATTTCGTT TGGCGGTGGC AAGGTTAGCG AAGACGAAGT CGCTTCCATG
CTTGGCACCA TTGACCACAA ACTAGTGCAA AACCTTGTGG GCGCGTTAAT AGCCGGGGAT
GGCAGCCAAA TTTTAACGTC GGTTGCTAAA TTTGCCGAAC ACGCCCCAGA CTTCGATGTA
GCTCTGGCCG ACCTCATAAC ACTGCTGCAC CGCATTGCTA TTGCGCAAGC GCTACCCGAT
GCGCTAGATA ACAGCTACGG CGATCGCACC CAAATATTGG AGTTTGCGAG TAAGCTTGCC
CCTGAAGATG TGCAGCTGTT TTATCAAACG GCCCTTATTG GCCGGCGTGA TTTGTCACTG
TCGCCCGACC CGCGCAGCGG CTTTGAAATG ACTTTGCTGC GAATGCTGGC ATTTAAGCCA
CAAGGTGTGG CCGATGTGCC TACTCAGCGC CTACAGGCAC AGCCCGCCAG TGCGCCGGCT
AGTAGTTCTG ACGTTGCTTC TGTTGCAGCT CCTGCGGCTC CGACTGCTCA AGCAGCACCG
CAGCCCTCGT CTAATGTTGA GCCTGCACCT GCTCAAGCGG CCCCCGAGCA GACTGAGCCC
AGCCCGCCAG CGCAGACGTC TCCGCCACAG CAAAACGTTG CGCCAAACAC GGTGGAAGAC
AATTCGCCAC CCGCAGATTA CTACGACAAT ATGCCGCCTT ACGAGGAGGC CCAAGAGCCT
GTAAAAAAGC CCCAAGCTGA GCCTCAACAG GCTCAGGCAG AGGTGCCCGC AAGTGAGCCC
GCGCCGTTAG GGCCAATGCA TACTGTGGTA ACCGCTGCAG AGTCAACCCA AGCCGTTGCC
GAGCCGGAAG TAAATACTTC GGCCCCTGCT AAAACGCCGG CGGATGCTCT GCGTGAGCAG
GTAAAAGCCA TTGTGGGCAA GGAGGGCATA AGTGCCCCGC CAAAACCTGC ACAGCAATTG
AAAAATACCC CCGCCGCGCC CATAAATGCA GCGCCGGTAG TGACTACGCC AATAAGCTTA
GAAGAGCTAA CCCCATCGCA TTGGGTAAGT GTATACAACC AGCTAAATGT TAAGGGTATT
TTGCAAAGTA CTGCTGCAAA CACTGTGCTA ATTGGGCGTG AAGATAATCA TTTAGATTTC
GCGTTAGACG AGCAAAAAAG TAGCCTCTTC GACCCGAGCC ACAGCGATAG GTTATCTGCG
CTATTAAGCG ATTATTTTGG TGTGCCTATC AAAGCAGCTA TCCACCTGCA AAACTTGCCG
GGTGATTTAG AAACACCAGC GGCTTACGCC ATACGTATAG ATCAAGAAAA ACGCGTGGCA
GCCATACAAA ATATGTACGA TGACCCTGTA GTGCAAACAC TACAGCAACA ATTTAATGCA
ACACTCGTTG AAGAAACTGT TACCTACCAA TAG
|
|---|
| Protein sequence | MSYQVLARKW RPRTFREMIG QEHVLRALIN ALDHGRLHHA YLFTGTRGVG KTSIARILAK
CLNCETGVSS EPCGECSACV EISEGRFVDL IEVDAASRTK VEDTRELLDN VQYAPTRGRY
KIYLIDEVHM LSNHSFNALL KTLEEPPEHV KFLLATTDPQ KLPVTILSRC LQFNLKNMSP
ERIVGHLSHI LEKEVIPFEE SALWQLARSA DGSMRDALSL TDQSISFGGG KVSEDEVASM
LGTIDHKLVQ NLVGALIAGD GSQILTSVAK FAEHAPDFDV ALADLITLLH RIAIAQALPD
ALDNSYGDRT QILEFASKLA PEDVQLFYQT ALIGRRDLSL SPDPRSGFEM TLLRMLAFKP
QGVADVPTQR LQAQPASAPA SSSDVASVAA PAAPTAQAAP QPSSNVEPAP AQAAPEQTEP
SPPAQTSPPQ QNVAPNTVED NSPPADYYDN MPPYEEAQEP VKKPQAEPQQ AQAEVPASEP
APLGPMHTVV TAAESTQAVA EPEVNTSAPA KTPADALREQ VKAIVGKEGI SAPPKPAQQL
KNTPAAPINA APVVTTPISL EELTPSHWVS VYNQLNVKGI LQSTAANTVL IGREDNHLDF
ALDEQKSSLF DPSHSDRLSA LLSDYFGVPI KAAIHLQNLP GDLETPAAYA IRIDQEKRVA
AIQNMYDDPV VQTLQQQFNA TLVEETVTYQ
|
|---|
| |